Publication date
April 2022
DOIAbstract
Changes Add support for STAR for RNA-seq alignment Record software versions in the samples outpu
Changes Add support for STAR for RNA-seq alignment Record software versions in the samples outpu
Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descript...
Changes Add an initial sort step to avoid GATK strange behaviour with unsorted BAMs Record software...
This is a minor release that fixes a bug introduced in v0.5.2. external annotation were not added in...
Changes Add STAR for alignment of RNA-seq data Record software versions in the output Repository ha...
Changes Add support for STAR two pass mode which increases sensitivity in novel splice junctions Ad...
Changes Add optional step SplitNCigarReads to support RNA data Change Picard's MarkDuplicates by sa...
Changes: Number of required parametrised on --cpus, default 8 Memory required parametrised on --...
Changes: Add support for single samples using --input_fastq1 and --input_fastq
Changes Performance improvement by merging the last two steps (SnpEff and bgzip/tabix) into a singl...
Changes Support for single sample through CLI parameters --input_name, --input_tumor_bam and --inpu...
First pre-release integrating alignment, mark duplicates, realignment around indels, variant calling...
Changes: Reimplement Hex in python to improve performance and robustness Fix several typos in the d...
Release equivalent to v0.3.0, this one should come out with a DOI for referencing this software
Bugfixes set expression_mutated_transcript to use RNA VAF by default instead of DNA VAF. (Only vers...
Changes Removes pickle-mixin from dependencies Upgrades pysam version to 0.19.1 Fix biopython versi...
Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descript...
Changes Add an initial sort step to avoid GATK strange behaviour with unsorted BAMs Record software...
This is a minor release that fixes a bug introduced in v0.5.2. external annotation were not added in...
Changes Add STAR for alignment of RNA-seq data Record software versions in the output Repository ha...
Changes Add support for STAR two pass mode which increases sensitivity in novel splice junctions Ad...
Changes Add optional step SplitNCigarReads to support RNA data Change Picard's MarkDuplicates by sa...
Changes: Number of required parametrised on --cpus, default 8 Memory required parametrised on --...
Changes: Add support for single samples using --input_fastq1 and --input_fastq
Changes Performance improvement by merging the last two steps (SnpEff and bgzip/tabix) into a singl...
Changes Support for single sample through CLI parameters --input_name, --input_tumor_bam and --inpu...
First pre-release integrating alignment, mark duplicates, realignment around indels, variant calling...
Changes: Reimplement Hex in python to improve performance and robustness Fix several typos in the d...
Release equivalent to v0.3.0, this one should come out with a DOI for referencing this software
Bugfixes set expression_mutated_transcript to use RNA VAF by default instead of DNA VAF. (Only vers...
Changes Removes pickle-mixin from dependencies Upgrades pysam version to 0.19.1 Fix biopython versi...
Annotation of mutated peptide sequences (mps) with published or novel potential neo-epitope descript...
Changes Add an initial sort step to avoid GATK strange behaviour with unsorted BAMs Record software...
This is a minor release that fixes a bug introduced in v0.5.2. external annotation were not added in...
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