Changes: Number of required parametrised on --cpus, default 8 Memory required parametrised on --memory, default 8 GB Tests automated in gitlab Implemented BWA aln inception approach with --inceptio
Changes: add support for a single input BAM file fix realignment step when no known indels are p...
Non functional changes Migrate workflow to DSL 2 Automated tests on GitHub Make conda dependencies ...
Minor changes: The output of HsMetrics was missing some fundamental fields, this is corrected no
Changes: Memory and CPUs are now parametrised more granularily Analysis intervals are now optional ...
Changes Add support for STAR for RNA-seq alignment Record software versions in the samples outpu
Changes Upgraded GATK version to 4.2.5.0 (see release notes https://github.com/broadinstitute/gatk/...
Changes Add optional step SplitNCigarReads to support RNA data Change Picard's MarkDuplicates by sa...
Changes: Add support for single samples using --input_fastq1 and --input_fastq
Changes It creates the reference genome indices if not available Bugfix The SplitNCigarReads oper...
Changes Performance improvement by merging the last two steps (SnpEff and bgzip/tabix) into a singl...
Changes Support for single sample through CLI parameters --input_name, --input_tumor_bam and --inpu...
Changes Add support for STAR two pass mode which increases sensitivity in novel splice junctions Ad...
Changes: Add an optional step to get metrics from the BAM file using Picard's CollectMultipleMetric...
Changes Add STAR for alignment of RNA-seq data Record software versions in the output Repository ha...
Changes Add an initial sort step to avoid GATK strange behaviour with unsorted BAMs Record software...
Changes: add support for a single input BAM file fix realignment step when no known indels are p...
Non functional changes Migrate workflow to DSL 2 Automated tests on GitHub Make conda dependencies ...
Minor changes: The output of HsMetrics was missing some fundamental fields, this is corrected no
Changes: Memory and CPUs are now parametrised more granularily Analysis intervals are now optional ...
Changes Add support for STAR for RNA-seq alignment Record software versions in the samples outpu
Changes Upgraded GATK version to 4.2.5.0 (see release notes https://github.com/broadinstitute/gatk/...
Changes Add optional step SplitNCigarReads to support RNA data Change Picard's MarkDuplicates by sa...
Changes: Add support for single samples using --input_fastq1 and --input_fastq
Changes It creates the reference genome indices if not available Bugfix The SplitNCigarReads oper...
Changes Performance improvement by merging the last two steps (SnpEff and bgzip/tabix) into a singl...
Changes Support for single sample through CLI parameters --input_name, --input_tumor_bam and --inpu...
Changes Add support for STAR two pass mode which increases sensitivity in novel splice junctions Ad...
Changes: Add an optional step to get metrics from the BAM file using Picard's CollectMultipleMetric...
Changes Add STAR for alignment of RNA-seq data Record software versions in the output Repository ha...
Changes Add an initial sort step to avoid GATK strange behaviour with unsorted BAMs Record software...
Changes: add support for a single input BAM file fix realignment step when no known indels are p...
Non functional changes Migrate workflow to DSL 2 Automated tests on GitHub Make conda dependencies ...
Minor changes: The output of HsMetrics was missing some fundamental fields, this is corrected no
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