Amplicon sequence variants (ASVs) and associated taxonomy called using DADA2 (v1.6.0) and Silva 16S database v132, along with anonymized specimen metadata. File list: Specimen_Table.csv: contains specimen type, subject id, and study day for each specimen collected. seqtab.rds: ASVs for each specimen (rownames correlate to specimen_id2 in specimen table) taxa.rds: taxonomic assignments for each ASV in seqtab.rd
Table providing a list of the ITS2 amplicon sequence variants (ASVs) included in final dataset (n, 1...
This ASV table is the raw sequencing abundances for the Chapter 4 dataset with accompanying metadata
Count table for ASVs generated from DADA2 from raw MiSeq reads. Rows are individual samples and colu...
Amplicon sequence variants (ASVs) and associated taxonomy called using DADA2 (v1.6.0) and Silva 16S ...
Amplicon sequence variants (ASVs) and associated taxonomy called using DADA2 (v1.6.0) and Silva 16S ...
The proportion of amplicon sequence variants (ASVs) assigned at a given taxonomic rank using the SIL...
Non-rarefied abundance table of Amplicon Sequence Variants (ASVs) and corresponding taxonomic classi...
Count table and taxonomy file for 16s sequencing of a seasonal study looking at microbial responses ...
This is a table that connects sequence IDs with taxonomic information (genus and species names)
The count_table_raw.txt file contains the raw reads for the article after processing through QIIME2 ...
Taxonomy assignments of each ASV generated from DADA2 using the RDP training set and the RDP classif...
Abigail 16S rRNA amplicon time-series taxonomy table for each ASV exported from phyloseq object. Pai...
The database used for the taxonomic assignment of reads generally comes from the SILVA database (htt...
Table detailing collection locality and GenBank accession numbers for 12S and ND-5 sequences. "Speci...
R1 16S rRNA amplicon time-series taxonomy table for each ASV exported from phyloseq object. Goes wit...
Table providing a list of the ITS2 amplicon sequence variants (ASVs) included in final dataset (n, 1...
This ASV table is the raw sequencing abundances for the Chapter 4 dataset with accompanying metadata
Count table for ASVs generated from DADA2 from raw MiSeq reads. Rows are individual samples and colu...
Amplicon sequence variants (ASVs) and associated taxonomy called using DADA2 (v1.6.0) and Silva 16S ...
Amplicon sequence variants (ASVs) and associated taxonomy called using DADA2 (v1.6.0) and Silva 16S ...
The proportion of amplicon sequence variants (ASVs) assigned at a given taxonomic rank using the SIL...
Non-rarefied abundance table of Amplicon Sequence Variants (ASVs) and corresponding taxonomic classi...
Count table and taxonomy file for 16s sequencing of a seasonal study looking at microbial responses ...
This is a table that connects sequence IDs with taxonomic information (genus and species names)
The count_table_raw.txt file contains the raw reads for the article after processing through QIIME2 ...
Taxonomy assignments of each ASV generated from DADA2 using the RDP training set and the RDP classif...
Abigail 16S rRNA amplicon time-series taxonomy table for each ASV exported from phyloseq object. Pai...
The database used for the taxonomic assignment of reads generally comes from the SILVA database (htt...
Table detailing collection locality and GenBank accession numbers for 12S and ND-5 sequences. "Speci...
R1 16S rRNA amplicon time-series taxonomy table for each ASV exported from phyloseq object. Goes wit...
Table providing a list of the ITS2 amplicon sequence variants (ASVs) included in final dataset (n, 1...
This ASV table is the raw sequencing abundances for the Chapter 4 dataset with accompanying metadata
Count table for ASVs generated from DADA2 from raw MiSeq reads. Rows are individual samples and colu...
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