ASVs, Taxonomy & Metadata

Amplicon sequence variants (ASVs) and associated taxonomy called using DADA2 (v1.6.0) and Silva 16S database v132, along with anonymized specimen metadata. File list: Specimen_Table.csv: contains specimen type, subject id, and study day for each specimen collected. Some specimens have data on antibiotics administered that day in the "abx_b" column. seqtab.rds: ASVs for each specimen (rownames correlate to specimen_id2 in specimen table) taxa.rds: taxonomic assignments for each ASV in seqtab.rd