Updated documentation (moved config documentation into readme). This is an intermediate release that marks the transition to a snakemake-workflow-catalog based documentation
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
3.19.5 (2023-01-30) Bug Fixes resource download fixes (proxy support for get_vep_cache, curl deploy...
Format workflow according to Python and Snakemake style guides (black and snakefmt)
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
3.19.3 (2023-01-15) Performance Improvements update to varlociraptor 5.6.1 (#189) (4c34c84
More flexible TMB configuration. Updated to Varlociraptor 4.1, which is able to detect additional ar...
Added linkouts to VarSEAK (@FelixMoelder). Updated to newer tool versions in case of GATK base recal...
Update to Varlociraptor 4.6 (@johanneskoesrter) Merge closeby covered regions to improve freebayes p...
3.18.6 (2022-11-15) Performance Improvements update to varlociraptor 5.3.3 (#178) (41fe68a
Update to latest tool versions. Standardized usage via the snakemake workflow catalog
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
Fixed sample collection in vcf-report, thereby avoiding crashes on more complex scenarios
Update to Varlociraptor 4.7, including various model improvements that should overall lead to a much...
Covered regions are now inferred using mosdepth instead of bedtools, leading to a speedup
5.0.1 (2023-08-25) Bug Fixes general fixes and optimizations (#263) (cc486d7) sample has umis (#265...
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
3.19.5 (2023-01-30) Bug Fixes resource download fixes (proxy support for get_vep_cache, curl deploy...
Format workflow according to Python and Snakemake style guides (black and snakefmt)
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
3.19.3 (2023-01-15) Performance Improvements update to varlociraptor 5.6.1 (#189) (4c34c84
More flexible TMB configuration. Updated to Varlociraptor 4.1, which is able to detect additional ar...
Added linkouts to VarSEAK (@FelixMoelder). Updated to newer tool versions in case of GATK base recal...
Update to Varlociraptor 4.6 (@johanneskoesrter) Merge closeby covered regions to improve freebayes p...
3.18.6 (2022-11-15) Performance Improvements update to varlociraptor 5.3.3 (#178) (41fe68a
Update to latest tool versions. Standardized usage via the snakemake workflow catalog
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
Fixed sample collection in vcf-report, thereby avoiding crashes on more complex scenarios
Update to Varlociraptor 4.7, including various model improvements that should overall lead to a much...
Covered regions are now inferred using mosdepth instead of bedtools, leading to a speedup
5.0.1 (2023-08-25) Bug Fixes general fixes and optimizations (#263) (cc486d7) sample has umis (#265...
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
3.19.5 (2023-01-30) Bug Fixes resource download fixes (proxy support for get_vep_cache, curl deploy...
Format workflow according to Python and Snakemake style guides (black and snakefmt)
DOI
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