snakemake-workflows/rna-seq-star-deseq2: Version 1.1.2
- Johannes Köster
- Sebastian Schmeier
- Jan Forster
- matrs
Publication date
May 2021
DOIAbstract
Format workflow according to Python and Snakemake style guides (black and snakefmt)
Format workflow according to Python and Snakemake style guides (black and snakefmt)
The reference transcriptome is now downloaded automatically from Ensembl, using new release and buil...
Extended caption on p-value histograms and empty data fix for fgsea (@dlaehnemann)
Full Changelog: https://github.com/SansamLab/Cut_And_Run_Analysis_SnakeMake/compare/v1.1.1...v1.1.
add protocol strandedness awareness make trimming optional adapt to latest best practices and struct...
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
Updated documentation (moved config documentation into readme). This is an intermediate release that...
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
Update to latest tool versions. Standardized usage via the snakemake workflow catalog
This is a major improvement of this workflow, bringing it up to date and extending its functionality...
deseq_init rule now outputs normalized counts as well (@jafors). Updated software versions (@lparson...
Snakemake is a workflow engine that provides a readable Python-based workflow definition language an...
RNA-seq analysis with Snakemake Snakemake is a workflow manager system for creating reproducible a...
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
Full Changelog: https://github.com/SansamLab/Process_RepTiming_Snakemake/compare/v1.0.1...v1.0.
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
The reference transcriptome is now downloaded automatically from Ensembl, using new release and buil...
Extended caption on p-value histograms and empty data fix for fgsea (@dlaehnemann)
Full Changelog: https://github.com/SansamLab/Cut_And_Run_Analysis_SnakeMake/compare/v1.1.1...v1.1.
add protocol strandedness awareness make trimming optional adapt to latest best practices and struct...
Switch to new deployment and usage info that conforms with the snakemake workflow catalogue setup
Updated documentation (moved config documentation into readme). This is an intermediate release that...
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
Update to latest tool versions. Standardized usage via the snakemake workflow catalog
This is a major improvement of this workflow, bringing it up to date and extending its functionality...
deseq_init rule now outputs normalized counts as well (@jafors). Updated software versions (@lparson...
Snakemake is a workflow engine that provides a readable Python-based workflow definition language an...
RNA-seq analysis with Snakemake Snakemake is a workflow manager system for creating reproducible a...
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
Full Changelog: https://github.com/SansamLab/Process_RepTiming_Snakemake/compare/v1.0.1...v1.0.
RNAseq workflow is now called mRNA-seq added noncoding-RNA-seq workflow added STARsolo mode to scRNA...
The reference transcriptome is now downloaded automatically from Ensembl, using new release and buil...
Extended caption on p-value histograms and empty data fix for fgsea (@dlaehnemann)
Full Changelog: https://github.com/SansamLab/Cut_And_Run_Analysis_SnakeMake/compare/v1.1.1...v1.1.
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