Update to Varlociraptor 4.7, including various model improvements that should overall lead to a much improved FDR control and more recognized artifacts, in particular on exome data with PCR amplification (@johanneskoester). Primer handling for amplicon sequencing with only a single primer per read pair (@FelixMoelder)
3.18.7 (2022-11-24) Bug Fixes fail for empty target regions (#181) (7563aaa) Filter offtarget varia...
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
3.24.0 (2023-04-24) Features Support new varlociraptor 8.0 observations (#225) (925f736
Update to Varlociraptor 4.6 (@johanneskoesrter) Merge closeby covered regions to improve freebayes p...
More flexible TMB configuration. Updated to Varlociraptor 4.1, which is able to detect additional ar...
3.19.3 (2023-01-15) Performance Improvements update to varlociraptor 5.6.1 (#189) (4c34c84
3.18.6 (2022-11-15) Performance Improvements update to varlociraptor 5.3.3 (#178) (41fe68a
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
3.20.0 (2023-02-10) Features add ability to use aux-files for candidate filtering (80f0ba9) Perfor...
4.0.1 (2023-06-14) Bug Fixes update varlociraptor (#244) (361c9ee) Performance Improvements updat...
Added linkouts to VarSEAK (@FelixMoelder). Updated to newer tool versions in case of GATK base recal...
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor...
3.8.0 (2022-03-12) Features genotyping support, minor fixes, performance improvements and config sc...
4.1.0 (2023-08-07) Features Handle trimmed fastqs plus additional fixes (#252) (13ae724
Update to Varlociraptor 3.4.0. Attention, this version introduces changes in the config file: Allo...
3.18.7 (2022-11-24) Bug Fixes fail for empty target regions (#181) (7563aaa) Filter offtarget varia...
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
3.24.0 (2023-04-24) Features Support new varlociraptor 8.0 observations (#225) (925f736
Update to Varlociraptor 4.6 (@johanneskoesrter) Merge closeby covered regions to improve freebayes p...
More flexible TMB configuration. Updated to Varlociraptor 4.1, which is able to detect additional ar...
3.19.3 (2023-01-15) Performance Improvements update to varlociraptor 5.6.1 (#189) (4c34c84
3.18.6 (2022-11-15) Performance Improvements update to varlociraptor 5.3.3 (#178) (41fe68a
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
3.20.0 (2023-02-10) Features add ability to use aux-files for candidate filtering (80f0ba9) Perfor...
4.0.1 (2023-06-14) Bug Fixes update varlociraptor (#244) (361c9ee) Performance Improvements updat...
Added linkouts to VarSEAK (@FelixMoelder). Updated to newer tool versions in case of GATK base recal...
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor...
3.8.0 (2022-03-12) Features genotyping support, minor fixes, performance improvements and config sc...
4.1.0 (2023-08-07) Features Handle trimmed fastqs plus additional fixes (#252) (13ae724
Update to Varlociraptor 3.4.0. Attention, this version introduces changes in the config file: Allo...
3.18.7 (2022-11-24) Bug Fixes fail for empty target regions (#181) (7563aaa) Filter offtarget varia...
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
3.24.0 (2023-04-24) Features Support new varlociraptor 8.0 observations (#225) (925f736