A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor
Freebayes and delly are now always limited to covered genome regions, in order to improve performanc...
Covered regions are now inferred using mosdepth instead of bedtools, leading to a speedup
3.24.0 (2023-04-24) Features Support new varlociraptor 8.0 observations (#225) (925f736
More flexible TMB configuration. Updated to Varlociraptor 4.1, which is able to detect additional ar...
Update to Varlociraptor 4.7, including various model improvements that should overall lead to a much...
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
Update to Varlociraptor 4.6 (@johanneskoesrter) Merge closeby covered regions to improve freebayes p...
3.19.3 (2023-01-15) Performance Improvements update to varlociraptor 5.6.1 (#189) (4c34c84
3.18.6 (2022-11-15) Performance Improvements update to varlociraptor 5.3.3 (#178) (41fe68a
Added linkouts to VarSEAK (@FelixMoelder). Updated to newer tool versions in case of GATK base recal...
Allow the optional definition of target_regions in the config for constraining variant calls (@johan...
3.18.7 (2022-11-24) Bug Fixes fail for empty target regions (#181) (7563aaa) Filter offtarget varia...
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
3.14.0 (2022-05-20) Features Hide columns in datavzrd report (#151) (7db7b35) Remove plotdata from ...
3.20.0 (2023-02-10) Features add ability to use aux-files for candidate filtering (80f0ba9) Perfor...
Freebayes and delly are now always limited to covered genome regions, in order to improve performanc...
Covered regions are now inferred using mosdepth instead of bedtools, leading to a speedup
3.24.0 (2023-04-24) Features Support new varlociraptor 8.0 observations (#225) (925f736
More flexible TMB configuration. Updated to Varlociraptor 4.1, which is able to detect additional ar...
Update to Varlociraptor 4.7, including various model improvements that should overall lead to a much...
Upgrade to Varlociraptor 3.1 (@johanneskoester) Best-practice formatting (@johanneskoester) Fixed re...
Update to Varlociraptor 4.6 (@johanneskoesrter) Merge closeby covered regions to improve freebayes p...
3.19.3 (2023-01-15) Performance Improvements update to varlociraptor 5.6.1 (#189) (4c34c84
3.18.6 (2022-11-15) Performance Improvements update to varlociraptor 5.3.3 (#178) (41fe68a
Added linkouts to VarSEAK (@FelixMoelder). Updated to newer tool versions in case of GATK base recal...
Allow the optional definition of target_regions in the config for constraining variant calls (@johan...
3.18.7 (2022-11-24) Bug Fixes fail for empty target regions (#181) (7563aaa) Filter offtarget varia...
fixed input handling for primer mapping include htslib/tabix for preprocessing REVEL-score
3.14.0 (2022-05-20) Features Hide columns in datavzrd report (#151) (7db7b35) Remove plotdata from ...
3.20.0 (2023-02-10) Features add ability to use aux-files for candidate filtering (80f0ba9) Perfor...
Freebayes and delly are now always limited to covered genome regions, in order to improve performanc...
Covered regions are now inferred using mosdepth instead of bedtools, leading to a speedup
3.24.0 (2023-04-24) Features Support new varlociraptor 8.0 observations (#225) (925f736
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