Increase the time needed for baserecalibration Update default docker images. The scatter regions has been removed. Regions for scattering need to be provided externally. This is more efficient for pipelines that work on multiple samples. Tasks were updated to contain the time_minutes runtime attribute and associated timeMinutes input, describing the maximum time the task will take to run. Only scatter when the number of scatters turns out to be 1
The docker image is now based on the miniconda3 layer, which greatly reduces build times. P(s) norma...
Update default CPAT version to 3.0.4. Use gffcompare to merge stringtie assembly GTF files, rather t...
Updates include Add high-level description of docker images and their build process Remove max GQ f...
Default docker images have been updated to newer versions. Replace biopet-scatterregions with scatte...
Add a scatterSizeMillions parameter to make it easier to set larger scatter sizes. Add proper copyr...
Bcftools samtools and picard images are updated to newer versions. Bcftools view now converts delly ...
Default docker images for various tools have been updated. Changes in Cromwell 48 made it impossible...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
What's Changed Update README for docker build script Fix for tiny shard of IntegrateGQ in single sa...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Allow using csv table format samplesheet as input format. Update tasks so they pass the correct memo...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
<p>(<b>a</b>) Average running time of each affinity function and filter of F<sup>2</sup> Dock 2.0. G...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Updated default versions for several tools to the newest version. Pin the volatile python container...
The docker image is now based on the miniconda3 layer, which greatly reduces build times. P(s) norma...
Update default CPAT version to 3.0.4. Use gffcompare to merge stringtie assembly GTF files, rather t...
Updates include Add high-level description of docker images and their build process Remove max GQ f...
Default docker images have been updated to newer versions. Replace biopet-scatterregions with scatte...
Add a scatterSizeMillions parameter to make it easier to set larger scatter sizes. Add proper copyr...
Bcftools samtools and picard images are updated to newer versions. Bcftools view now converts delly ...
Default docker images for various tools have been updated. Changes in Cromwell 48 made it impossible...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
What's Changed Update README for docker build script Fix for tiny shard of IntegrateGQ in single sa...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Allow using csv table format samplesheet as input format. Update tasks so they pass the correct memo...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
<p>(<b>a</b>) Average running time of each affinity function and filter of F<sup>2</sup> Dock 2.0. G...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Updated default versions for several tools to the newest version. Pin the volatile python container...
The docker image is now based on the miniconda3 layer, which greatly reduces build times. P(s) norma...
Update default CPAT version to 3.0.4. Use gffcompare to merge stringtie assembly GTF files, rather t...
Updates include Add high-level description of docker images and their build process Remove max GQ f...
DOI
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