Bcftools samtools and picard images are updated to newer versions. Bcftools view now converts delly vcf to a gzipped version. Tasks were updated to contain the time_minutes runtime attribute and associated timeMinutes input, describing the maximum time the task will take to run
Small changes were made to support miniwdl and miniwdl is now the recommended tool to run this pipel...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
Move commonly used inputs to the top-level workflow inputs sections in order to work better with cro...
Default docker images have been updated to newer versions. Replace biopet-scatterregions with scatte...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
Increase the time needed for baserecalibration Update default docker images. The scatter regions has...
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF fil...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Added a workflow for somatic SV calling using GRIDSS, delly and manta. Clever is now disabled by def...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
Update tasks so they pass the correct memory requirements to the execution engine. Memory requireme...
Memory runtime attributes are now Strings indicating total memory, as opposed to Ints indicating mem...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
sample.wdl: Remove postUmiDedupMarkDuplicates. dockerImages.yml: Update umitools (v1.1.1) image (inc...
Small changes were made to support miniwdl and miniwdl is now the recommended tool to run this pipel...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
Move commonly used inputs to the top-level workflow inputs sections in order to work better with cro...
Default docker images have been updated to newer versions. Replace biopet-scatterregions with scatte...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
Increase the time needed for baserecalibration Update default docker images. The scatter regions has...
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF fil...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Added a workflow for somatic SV calling using GRIDSS, delly and manta. Clever is now disabled by def...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
Update tasks so they pass the correct memory requirements to the execution engine. Memory requireme...
Memory runtime attributes are now Strings indicating total memory, as opposed to Ints indicating mem...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
sample.wdl: Remove postUmiDedupMarkDuplicates. dockerImages.yml: Update umitools (v1.1.1) image (inc...
Small changes were made to support miniwdl and miniwdl is now the recommended tool to run this pipel...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
Move commonly used inputs to the top-level workflow inputs sections in order to work better with cro...
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