Update tasks so they pass the correct memory requirements to the execution engine. Memory requirements are set on a per-task (not per-core) basis. Mutect2: Filtered output no longer overwrites unfiltered mutect2 outpu
version 3.1.0 Default threads for BWA in bwa.Kit task: 4. Samtools sort in the same task: 1. Output...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
version 5.0.0 Update CPAT to version 3.0.4. Changed the outFilePath input to outputPrefix. Surviv...
Memory runtime attributes are now Strings indicating total memory, as opposed to Ints indicating mem...
Default docker images have been updated to newer versions. Replace biopet-scatterregions with scatte...
Added a workflow for somatic SV calling using GRIDSS, delly and manta. Clever is now disabled by def...
Move commonly used inputs to the top-level workflow inputs sections in order to work better with cro...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Add the highlyDiploidPercentage and somaticMinPuritySpread inputs to the hmtools PURPLE task. Add a ...
Remove GRIDSS from the pipeline. Exclude GRIDSS from SURVIVOR merging: SVs were only defined as BNDs...
Bcftools samtools and picard images are updated to newer versions. Bcftools view now converts delly ...
version 3.1.0 Default threads for BWA in bwa.Kit task: 4. Samtools sort in the same task: 1. Output...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
version 5.0.0 Update CPAT to version 3.0.4. Changed the outFilePath input to outputPrefix. Surviv...
Memory runtime attributes are now Strings indicating total memory, as opposed to Ints indicating mem...
Default docker images have been updated to newer versions. Replace biopet-scatterregions with scatte...
Added a workflow for somatic SV calling using GRIDSS, delly and manta. Clever is now disabled by def...
Move commonly used inputs to the top-level workflow inputs sections in order to work better with cro...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Add the highlyDiploidPercentage and somaticMinPuritySpread inputs to the hmtools PURPLE task. Add a ...
Remove GRIDSS from the pipeline. Exclude GRIDSS from SURVIVOR merging: SVs were only defined as BNDs...
Bcftools samtools and picard images are updated to newer versions. Bcftools view now converts delly ...
version 3.1.0 Default threads for BWA in bwa.Kit task: 4. Samtools sort in the same task: 1. Output...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
version 5.0.0 Update CPAT to version 3.0.4. Changed the outFilePath input to outputPrefix. Surviv...
DOI
Add to ORKG