biowdl/tasks: Release 3.1.0

version 3.1.0 Default threads for BWA in bwa.Kit task: 4. Samtools sort in the same task: 1. Output BAM compression level to 1. Lima: Add missing output to parameter_meta. Lima: Remove outputPrefix variable from output section. Isoseq3: Make sure stderr log file from Refine is unique and not overwritten. Isoseq3: Add workaround in Refine for glob command not locating files in output directory. Isoseq3: Fix --min-polya-length argument syntax. Lima: Add workaround for glob command not locating files in output directory. CCS: Add missing backslash. Cutadapt now explicitly calls the --compression-level flag with compression level 1 to prevent cutadapt from using very high gzip compression level 6 that uses 400% more cpu time. Update default docker image for cutadapt and fastqc. Default number of cores for cutadapt and bwamem to 4 cores