Allow using csv table format samplesheet as input format. Update tasks so they pass the correct memory requirements to the execution engine. Memory requirements are set on a per-task (not per-core) basis. added option to use bwakit as aligner region input is no longer passed to gatk-preprocess added option to skip germline variant callin
In version 3.0.0 the RNA-seq pipeline was brought up to date with the GATK best practices pipeline....
Update tasks so they pass the correct memory requirements to the execution engine. Memory requireme...
<p>(A) SNP calling accuracy with or without Coval-Refine. (B) Indel calling accuracy with or without...
Allow using csv table format samplesheet as input format. Update tasks so they pass the correct memo...
Small changes were made to support miniwdl and miniwdl is now the recommended tool to run this pipel...
Add options to disable joint genotyping and allow per sample variant calling. Make sure all importan...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
Updated default versions for several tools to the newest version. Pin the volatile python container...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
sample.wdl: Remove postUmiDedupMarkDuplicates. dockerImages.yml: Update umitools (v1.1.1) image (inc...
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF fil...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
In version 3.0.0 the RNA-seq pipeline was brought up to date with the GATK best practices pipeline....
Update tasks so they pass the correct memory requirements to the execution engine. Memory requireme...
<p>(A) SNP calling accuracy with or without Coval-Refine. (B) Indel calling accuracy with or without...
Allow using csv table format samplesheet as input format. Update tasks so they pass the correct memo...
Small changes were made to support miniwdl and miniwdl is now the recommended tool to run this pipel...
Add options to disable joint genotyping and allow per sample variant calling. Make sure all importan...
The bam-to-gvcf and jointgenotyping subworkflows were combined in a single gatk-variantcalling pipel...
Updated default versions for several tools to the newest version. Pin the volatile python container...
Make intervals optional for GATK CombineGVCFs Updated biowdl-input-converter version. GATK CombineGV...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
sample.wdl: Remove postUmiDedupMarkDuplicates. dockerImages.yml: Update umitools (v1.1.1) image (inc...
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF fil...
A BioWDL workflow for preprocessing BAM files for variantcalling. Based on the GATK Best Practices. ...
Replace the bam-to-gvcf and jointgenotyping pipelines with a gatk-variantcalling pipeline. This red...
In version 3.0.0 the RNA-seq pipeline was brought up to date with the GATK best practices pipeline....
Update tasks so they pass the correct memory requirements to the execution engine. Memory requireme...
<p>(A) SNP calling accuracy with or without Coval-Refine. (B) Indel calling accuracy with or without...
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