broadinstitute/gatk-sv: v0.28.2-beta

Updates include Add high-level description of docker images and their build process Remove max GQ filtering from per sample QC Update protein-coding GTF to MANE v1.2 Reference panel resources and critical bug fixes Add FilterGenotypes workflow Remove use of the file command Move PESR genotyping filter statuses to info fields Bug fix building samtools-cloud docker Bug fix Github actions out of disk error Sharded AnnotateVcf workflow Add Terra validation to Github actions Resolve new linting errors Deduplicate records and CPX variant IDs in ResolveComplexVariants Full Changelog: https://github.com/broadinstitute/gatk-sv/compare/v0.28.1-beta...v0.28.2-bet