Features if present, parse EF tag and consider single end reads marked to entirely cover the originating fragment for insert size statistics. (#336) (76a0912) report number of omitted observations (#331) (fe0a4b7) Bug Fixes add default value for propagate_info_fields in order to fix deserialization during testcase generation (7669f92) match EF-tag (#337) (6d006a3
Features added ability to omit MAPQ adjustment for known variants (varlociraptor preprocess variant...
Features added inference of classical genotypes from Varlociraptor's AF field (see varlociraptor ge...
Bug Fixes do not skip haplotype determination if SVTYPE tag is not present in VCF (#295) (1c22f70
⚠ BREAKING CHANGES consider edit distance to alt allele, and infer additional third allele from rea...
Fixed allele frequency biases that occurred due to missed evidence when investigating breakends. Fix...
Features by default, use prior to guard absence or presence of variant but weight all decisions abo...
Features optionally report fragment id for each observation (--report-fragment-ids); this informati...
Bug Fixes display 3 digits in normalized formulae (f5e5261) Removed check for coding variants (#193...
Features improved formula simplification for negations which can provide major speedups and fixes a...
Bug Fixes temporarily disable performance optimization in realignment because it can lead to undere...
Polished TMB plots. Allow to omit insert size evidence. This is important for amplicon data, where i...
⚠ BREAKING CHANGES Rename estimate tmb subcommand into estimate mutational-burden (#182) Features ...
3.21.0 (2023-02-17) Features Plot simple observations (#201) (c940ec5) Set excluded regions for del...
Features adaptive integration (speeding up the evaluation of complex scenarios) (#199) (8043f94) B...
Bug Fixes erroneous integral boundary adjustment when having small VAF intervals and only very few ...
Features added ability to omit MAPQ adjustment for known variants (varlociraptor preprocess variant...
Features added inference of classical genotypes from Varlociraptor's AF field (see varlociraptor ge...
Bug Fixes do not skip haplotype determination if SVTYPE tag is not present in VCF (#295) (1c22f70
⚠ BREAKING CHANGES consider edit distance to alt allele, and infer additional third allele from rea...
Fixed allele frequency biases that occurred due to missed evidence when investigating breakends. Fix...
Features by default, use prior to guard absence or presence of variant but weight all decisions abo...
Features optionally report fragment id for each observation (--report-fragment-ids); this informati...
Bug Fixes display 3 digits in normalized formulae (f5e5261) Removed check for coding variants (#193...
Features improved formula simplification for negations which can provide major speedups and fixes a...
Bug Fixes temporarily disable performance optimization in realignment because it can lead to undere...
Polished TMB plots. Allow to omit insert size evidence. This is important for amplicon data, where i...
⚠ BREAKING CHANGES Rename estimate tmb subcommand into estimate mutational-burden (#182) Features ...
3.21.0 (2023-02-17) Features Plot simple observations (#201) (c940ec5) Set excluded regions for del...
Features adaptive integration (speeding up the evaluation of complex scenarios) (#199) (8043f94) B...
Bug Fixes erroneous integral boundary adjustment when having small VAF intervals and only very few ...
Features added ability to omit MAPQ adjustment for known variants (varlociraptor preprocess variant...
Features added inference of classical genotypes from Varlociraptor's AF field (see varlociraptor ge...
Bug Fixes do not skip haplotype determination if SVTYPE tag is not present in VCF (#295) (1c22f70