Publication date
October 2022
DOIAbstract
Bug Fixes do not skip haplotype determination if SVTYPE tag is not present in VCF (#295) (1c22f70
Bug Fixes do not skip haplotype determination if SVTYPE tag is not present in VCF (#295) (1c22f70
Bug Fixes convert empty VAF spectrum to false and ensure that an empty spectrum evaluates as zero p...
Bug Fixes fixed bug causing NaN likelihoods when dealing with samples that do not contain any homop...
Bug Fixes display 3 digits in normalized formulae (f5e5261) Removed check for coding variants (#193...
Fixes Use number specifications from VCF 4.3 spec for SVTYPE, SVLEN, END, EVENT, and MATEID (#293)
Fixed allele frequency biases that occurred due to missed evidence when investigating breakends. Fix...
Bug Fixes do not count an inherited somatic mutation twice if the VAF changes between samples, as t...
Features added inference of classical genotypes from Varlociraptor's AF field (see varlociraptor ge...
Bug Fixes temporarily disable performance optimization in realignment because it can lead to undere...
Bug Fixes fix bug in homopolymer error detection that has led to wrong homopolymer error calls. Thi...
Bug Fixes check if cfg has_u128 or not (#264) (6cbe399) remove conflicting From implementation (#26...
Features in FDR control, skip events that do not occur in the BCF header. Error if no event matches...
⚠ BREAKING CHANGES consider edit distance to alt allele, and infer additional third allele from rea...
Features adaptive integration (speeding up the evaluation of complex scenarios) (#199) (8043f94) B...
Features added ability to omit MAPQ adjustment for known variants (varlociraptor preprocess variant...
Features better homopolymer error detection (#226) (b95d03d) eliminate false positives and false ne...
Bug Fixes convert empty VAF spectrum to false and ensure that an empty spectrum evaluates as zero p...
Bug Fixes fixed bug causing NaN likelihoods when dealing with samples that do not contain any homop...
Bug Fixes display 3 digits in normalized formulae (f5e5261) Removed check for coding variants (#193...
Fixes Use number specifications from VCF 4.3 spec for SVTYPE, SVLEN, END, EVENT, and MATEID (#293)
Fixed allele frequency biases that occurred due to missed evidence when investigating breakends. Fix...
Bug Fixes do not count an inherited somatic mutation twice if the VAF changes between samples, as t...
Features added inference of classical genotypes from Varlociraptor's AF field (see varlociraptor ge...
Bug Fixes temporarily disable performance optimization in realignment because it can lead to undere...
Bug Fixes fix bug in homopolymer error detection that has led to wrong homopolymer error calls. Thi...
Bug Fixes check if cfg has_u128 or not (#264) (6cbe399) remove conflicting From implementation (#26...
Features in FDR control, skip events that do not occur in the BCF header. Error if no event matches...
⚠ BREAKING CHANGES consider edit distance to alt allele, and infer additional third allele from rea...
Features adaptive integration (speeding up the evaluation of complex scenarios) (#199) (8043f94) B...
Features added ability to omit MAPQ adjustment for known variants (varlociraptor preprocess variant...
Features better homopolymer error detection (#226) (b95d03d) eliminate false positives and false ne...
Bug Fixes convert empty VAF spectrum to false and ensure that an empty spectrum evaluates as zero p...
Bug Fixes fixed bug causing NaN likelihoods when dealing with samples that do not contain any homop...
Bug Fixes display 3 digits in normalized formulae (f5e5261) Removed check for coding variants (#193...
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