maxplanck-ie/snakepipes: Release_2.4.0
- Devon Ryan
- Vivek Bhardwaj
- Steffen Heyne
- Katarzyna Sikora
- Fabian Kilpert
- hilgersv
- Andreas Richter
- LeilyR
- WardDeb
- thomasmanke
- Remi-Montagne
- Gautier RICHARD
- Michael
- Kashyap Chhatbar
- jaboehm
Publication date
November 2020
DOIAbstract
snakePipes 2.4.0 Added support for multiple pairwise comparisons for DESeq2, sleuth, and rMats in the mRNA-seq workflow, as well as for DESeq2 in the noncoding-RNA-seq workflow. Loompy from conda is now used in mode STARsolo in scRNA-seq workflow. Added bamExt to mRNA-seq and noncoding-RNA-seq commandline arguments. Added multi-thread support to rMats in mRNA-seq workflow. Fixed deepTools GC bias command with SE reads. Bumped HiC explorer version. Fixed STARsoloCoords for Custom kit
Add to ORKG