Additional file 2: Fig. S1. Sequencing depth and rarefaction curves. Fig. S2. Performance of WGA in metagenomics using sub-nanogram DNA. Fig. S3. Comparison of non-WGA-based DNA library preparation methods. Fig. S4. Characteristics of contaminating DNA. Fig. S5. Thresholds and performance of in silico decontamination methods
Table S1. PCR primer sequences for 8 genes. Table S2. Mis-assignment rate of control group with Q30 ...
Table S1. Summary statistics for reads generated by Nanopore (numbers in bold) and Illumina assembli...
Table S3. Highly comparable RPKMs resulted from RNA-Seq using standard Illumina protocol and the sub...
Additional file 1: Table S1. Composition and sequences of the synthetic DNA material sequins. Table ...
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
Figure S3. Quality control information. A) DNA quantification pre-library-prep, but post-host-DNA-de...
DNA purification reagents vary in their ability to recover low amounts of DNA. a Recovered DNA amoun...
Figure S1. Bases classified total or target over centrifuge score. Each sample has two lines of the ...
Analysis of library complexity by Preseq package. The library complexity was estimated by Preseq pac...
Summary: Metagenomic sequencing is a promising approach for identifying and characterizing organisms...
Figure S2. Each species identified by centrifuge showing total bases over number of reads as proport...
DNA profiles in H3K4me3 and H3K27me3 ChIP-seq libraries generated through different purification rea...
High-throughput sequencing technologies have strongly impacted microbiology, providing a rapid and c...
Figure S2. Optimization of lyPMA conditions for human DNA depletion. qPCR analysis of the relative a...
Effect of in silico decontamination on taxonomic profiles of culture dilutions and negative extracti...
Table S1. PCR primer sequences for 8 genes. Table S2. Mis-assignment rate of control group with Q30 ...
Table S1. Summary statistics for reads generated by Nanopore (numbers in bold) and Illumina assembli...
Table S3. Highly comparable RPKMs resulted from RNA-Seq using standard Illumina protocol and the sub...
Additional file 1: Table S1. Composition and sequences of the synthetic DNA material sequins. Table ...
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
Figure S3. Quality control information. A) DNA quantification pre-library-prep, but post-host-DNA-de...
DNA purification reagents vary in their ability to recover low amounts of DNA. a Recovered DNA amoun...
Figure S1. Bases classified total or target over centrifuge score. Each sample has two lines of the ...
Analysis of library complexity by Preseq package. The library complexity was estimated by Preseq pac...
Summary: Metagenomic sequencing is a promising approach for identifying and characterizing organisms...
Figure S2. Each species identified by centrifuge showing total bases over number of reads as proport...
DNA profiles in H3K4me3 and H3K27me3 ChIP-seq libraries generated through different purification rea...
High-throughput sequencing technologies have strongly impacted microbiology, providing a rapid and c...
Figure S2. Optimization of lyPMA conditions for human DNA depletion. qPCR analysis of the relative a...
Effect of in silico decontamination on taxonomic profiles of culture dilutions and negative extracti...
Table S1. PCR primer sequences for 8 genes. Table S2. Mis-assignment rate of control group with Q30 ...
Table S1. Summary statistics for reads generated by Nanopore (numbers in bold) and Illumina assembli...
Table S3. Highly comparable RPKMs resulted from RNA-Seq using standard Illumina protocol and the sub...