DNA profiles in H3K4me3 and H3K27me3 ChIP-seq libraries generated through different purification reagents. After library amplification with 12 cycles of PCR, DNAs were analyzed by the Fragment Analyzer. Lane 1 (EDL St), the library from 1 ng of purified ChIP DNA from aliquot A; Lane 2 (1 ng QmM), the library from stored DNA in MaxyClear tube after purification by MinElute PCR Purification Kit from aliquot B; Lane 3 (1 ng QmP), the library from stored DNA in Premium Tube after purification by MinElute PCR Purification Kit from aliquot B; Lane 4 (Input), the library from 1 ng of purified input DNA from the aliquot A. Left panel is the profile of H3K4me3 libraries, and right panel is the profile of H3K27me3 libraries. (PDF 123 kb
Experimental flow chart of DNase I SIM protocol and preparation of DNase-seq libraries. Filling-in t...
Table S5. List of primer sequences used to amplify 2C-ChIP libraries prior to deep sequencing on a P...
Figure S3. Quality control information. A) DNA quantification pre-library-prep, but post-host-DNA-de...
DNA purification reagents vary in their ability to recover low amounts of DNA. a Recovered DNA amoun...
ChIP enrichment analyzed by qPCR. The ChIP DNA was analyzed by qPCR in a region of constitutively ac...
Analysis of library complexity by Preseq package. The library complexity was estimated by Preseq pac...
ChIP-seq data generated with different purification reagents are highly correlated with the correspo...
DNA profiles in RNAP II, H3K27Ac, H3K4me3 and H3K27me3 ChIP-seq libraries from mouse liver FFPE and ...
Figure S3. DNA recovery after immunoselection with antiH3K27ac and anti-H3K27me3 antibodies. After i...
Table S3. List of primer sequences used to PCR-quantify DNA regions isolated by chromatin immunoprec...
Abstract Background Chromatin immunoprecipitation-sequencing (ChIP-seq) is a widely used epigenetic ...
The genomic location of primer pair along with the peak profiles of H3K4me3 and H3K27me3 marks are v...
PCR fragment DNA substrates nucleotide sequences. (A) 1789 bp PCR fragment DNA, containing two conve...
Figure S2. Defining the optimal 2C-ChIP linear detection range. a Diagram of the HOXA cluster region...
PCR amplification of specific gyr A gene fragment (1027 bp) in B. subtilis . Lane M: 100 bp plus DNA...
Experimental flow chart of DNase I SIM protocol and preparation of DNase-seq libraries. Filling-in t...
Table S5. List of primer sequences used to amplify 2C-ChIP libraries prior to deep sequencing on a P...
Figure S3. Quality control information. A) DNA quantification pre-library-prep, but post-host-DNA-de...
DNA purification reagents vary in their ability to recover low amounts of DNA. a Recovered DNA amoun...
ChIP enrichment analyzed by qPCR. The ChIP DNA was analyzed by qPCR in a region of constitutively ac...
Analysis of library complexity by Preseq package. The library complexity was estimated by Preseq pac...
ChIP-seq data generated with different purification reagents are highly correlated with the correspo...
DNA profiles in RNAP II, H3K27Ac, H3K4me3 and H3K27me3 ChIP-seq libraries from mouse liver FFPE and ...
Figure S3. DNA recovery after immunoselection with antiH3K27ac and anti-H3K27me3 antibodies. After i...
Table S3. List of primer sequences used to PCR-quantify DNA regions isolated by chromatin immunoprec...
Abstract Background Chromatin immunoprecipitation-sequencing (ChIP-seq) is a widely used epigenetic ...
The genomic location of primer pair along with the peak profiles of H3K4me3 and H3K27me3 marks are v...
PCR fragment DNA substrates nucleotide sequences. (A) 1789 bp PCR fragment DNA, containing two conve...
Figure S2. Defining the optimal 2C-ChIP linear detection range. a Diagram of the HOXA cluster region...
PCR amplification of specific gyr A gene fragment (1027 bp) in B. subtilis . Lane M: 100 bp plus DNA...
Experimental flow chart of DNase I SIM protocol and preparation of DNase-seq libraries. Filling-in t...
Table S5. List of primer sequences used to amplify 2C-ChIP libraries prior to deep sequencing on a P...
Figure S3. Quality control information. A) DNA quantification pre-library-prep, but post-host-DNA-de...