ChIP enrichment analyzed by qPCR. The ChIP DNA was analyzed by qPCR in a region of constitutively active chromatin region (GAPDH-TSS, H3K4me3-positive), a developmentally repressed region (MYT1-TSS, H3K27me3-positive), and an intergenic region (C19, H3K4me3- and H3K27me3-negative) from HeLa cells. Enrichment in the tested loci is shown as the percentage of input. (PDF 87Â kb
BED files. This folder contains the input-normalized 2C-ChIP data in BedGraph format of all the ChIP...
Table S1. HOXA and lncRNA gene expression in NT2-D1 cells before and after a 3-day treatment with re...
<p>(A) Screen shots of ChIP-seq results displayed from the UCSC genome browser. Shown are seven diff...
DNA profiles in H3K4me3 and H3K27me3 ChIP-seq libraries generated through different purification rea...
DNA purification reagents vary in their ability to recover low amounts of DNA. a Recovered DNA amoun...
Table S3. List of primer sequences used to PCR-quantify DNA regions isolated by chromatin immunoprec...
ChIP-seq data generated with different purification reagents are highly correlated with the correspo...
Analysis of library complexity by Preseq package. The library complexity was estimated by Preseq pac...
Figure S2. Defining the optimal 2C-ChIP linear detection range. a Diagram of the HOXA cluster region...
Figure S3. DNA recovery after immunoselection with antiH3K27ac and anti-H3K27me3 antibodies. After i...
qPCR validation of enrichment peaks identified by FUS and EWS ChIP-seq. The enrichment of DNA was qu...
The genomic location of primer pair along with the peak profiles of H3K4me3 and H3K27me3 marks are v...
Figure S1. SUZ12 binding analysis by 2C-ChIP and ChIP-qPCR correlate well at the HOXA cluster. a 2C-...
Setup of chromatin preparation conditions. Table S1. ChIP-qPCR primers. Table S2. Quantity of chroma...
DNA profiles in RNAP II, H3K27Ac, H3K4me3 and H3K27me3 ChIP-seq libraries from mouse liver FFPE and ...
BED files. This folder contains the input-normalized 2C-ChIP data in BedGraph format of all the ChIP...
Table S1. HOXA and lncRNA gene expression in NT2-D1 cells before and after a 3-day treatment with re...
<p>(A) Screen shots of ChIP-seq results displayed from the UCSC genome browser. Shown are seven diff...
DNA profiles in H3K4me3 and H3K27me3 ChIP-seq libraries generated through different purification rea...
DNA purification reagents vary in their ability to recover low amounts of DNA. a Recovered DNA amoun...
Table S3. List of primer sequences used to PCR-quantify DNA regions isolated by chromatin immunoprec...
ChIP-seq data generated with different purification reagents are highly correlated with the correspo...
Analysis of library complexity by Preseq package. The library complexity was estimated by Preseq pac...
Figure S2. Defining the optimal 2C-ChIP linear detection range. a Diagram of the HOXA cluster region...
Figure S3. DNA recovery after immunoselection with antiH3K27ac and anti-H3K27me3 antibodies. After i...
qPCR validation of enrichment peaks identified by FUS and EWS ChIP-seq. The enrichment of DNA was qu...
The genomic location of primer pair along with the peak profiles of H3K4me3 and H3K27me3 marks are v...
Figure S1. SUZ12 binding analysis by 2C-ChIP and ChIP-qPCR correlate well at the HOXA cluster. a 2C-...
Setup of chromatin preparation conditions. Table S1. ChIP-qPCR primers. Table S2. Quantity of chroma...
DNA profiles in RNAP II, H3K27Ac, H3K4me3 and H3K27me3 ChIP-seq libraries from mouse liver FFPE and ...
BED files. This folder contains the input-normalized 2C-ChIP data in BedGraph format of all the ChIP...
Table S1. HOXA and lncRNA gene expression in NT2-D1 cells before and after a 3-day treatment with re...
<p>(A) Screen shots of ChIP-seq results displayed from the UCSC genome browser. Shown are seven diff...