Additional file 11: Figure S6. Pol II, H3K36me2 and H3K36me3 densities at 60 h post-PH for the Alb gene. (A) Genomic view of the Alb gene. Densities of the central 50 bp of paired-end reads for Pol II (pink), H3K4me3 (green) and H3K36me3 (blue) ChIP fragments are shown for 0 h to 1 week post-PH. Similarly, densities for H3K36me2 and input fragments at 60 h post-PH are shown. (B) H3K4me3 (green), Pol II promoter (burgundy) and body (pink), and H3K36me3 (blue) log2 ChIP/input fragment-density comparison for the Alb gene post-PH. The central 50 bp of the paired-end reads were used for quantification. The regions used for each quantitation are given in the text
Figure S2. Distribution of gene expression changes. (A) Absolute log2 fold changes in gene expressio...
Additional file 1: Supplemental Figure 1. (A) Gene Ontology (GO) enrichment scatterplot of the top 2...
Each data subset of human housekeeping genes (expressed in 30 or 31 tissues of 31 in total) and tiss...
Additional file 7: Figure S4. Pol II, H3K36me2 and H3K36me3 densities at 60 h post-PH for the Cebpa ...
Additional file 10: Figure S5. RNA abundance of the acute-response Saa genes post-PH. RNA-seq RPKM v...
Additional file 9: Figures S3. (A–E) Additional examples of transcriptional gene activity post-PH. D...
Additional file 5: Figure S2. (A) Distribution of silhouette scores as a result of the PAM clusterin...
Additional file 1: Fig. S1. (A) Description of the mouse liver regeneration stages, collection time ...
Additional file 4: Table S2. List of genes in Set 3 with their associated classification in Sets 3.1...
Additional file 8: Movie S1. Temporal changes in gene expression post-PH in the KEGG cell-cycle path...
Additional file 6: Table S3. Complete list of GO terms associated with genes in Sets 1â3.7 with th...
Additional file 2: Figure S2. Heatmap showing the intersection of the most differentially expressed ...
Additional file 1: Figure S1. Genomic DNA repetitive elements, DNA replication and histone modificat...
Additional file 2: Fig. S1. Correlation between the magnitude of the PC that represents A/B compartm...
Additional file 4. Comparative topology of H3K4me3 and RNA Pol II Ser5P, markers for transcriptional...
Figure S2. Distribution of gene expression changes. (A) Absolute log2 fold changes in gene expressio...
Additional file 1: Supplemental Figure 1. (A) Gene Ontology (GO) enrichment scatterplot of the top 2...
Each data subset of human housekeeping genes (expressed in 30 or 31 tissues of 31 in total) and tiss...
Additional file 7: Figure S4. Pol II, H3K36me2 and H3K36me3 densities at 60 h post-PH for the Cebpa ...
Additional file 10: Figure S5. RNA abundance of the acute-response Saa genes post-PH. RNA-seq RPKM v...
Additional file 9: Figures S3. (A–E) Additional examples of transcriptional gene activity post-PH. D...
Additional file 5: Figure S2. (A) Distribution of silhouette scores as a result of the PAM clusterin...
Additional file 1: Fig. S1. (A) Description of the mouse liver regeneration stages, collection time ...
Additional file 4: Table S2. List of genes in Set 3 with their associated classification in Sets 3.1...
Additional file 8: Movie S1. Temporal changes in gene expression post-PH in the KEGG cell-cycle path...
Additional file 6: Table S3. Complete list of GO terms associated with genes in Sets 1â3.7 with th...
Additional file 2: Figure S2. Heatmap showing the intersection of the most differentially expressed ...
Additional file 1: Figure S1. Genomic DNA repetitive elements, DNA replication and histone modificat...
Additional file 2: Fig. S1. Correlation between the magnitude of the PC that represents A/B compartm...
Additional file 4. Comparative topology of H3K4me3 and RNA Pol II Ser5P, markers for transcriptional...
Figure S2. Distribution of gene expression changes. (A) Absolute log2 fold changes in gene expressio...
Additional file 1: Supplemental Figure 1. (A) Gene Ontology (GO) enrichment scatterplot of the top 2...
Each data subset of human housekeeping genes (expressed in 30 or 31 tissues of 31 in total) and tiss...