Module runtime. The total real runtime of each module of metaWRAP when analyzing three samples from the metaHIT gut metagenomic survey. The modules were tested with default parameters on a Linux x64 server with 24 cores and 100Â GB of RAM. (XLSX 23 kb
Table S1. The input functional gene APM data of eight typical environmental metagenomic samples. (TX...
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
A2metricTable.txt: REAPR, CEGMA and contiguity statistics reported for all Assemblathon2 metassembli...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Figure S1. Detailed walkthrough of the data files, software, databases, and custom scripts that meta...
Figure S8. Clustered heatmaps showing the log of bin abundance of bins extracted with metaWRAP-Bin_r...
Taxonomic distribution of reads from water, gut, and soil metagenomes, estimated with the metaWRAP-K...
Figure S9. MetaWRAP-Blobology visualization of water, gut, and soil metagenomes, showing the GC and ...
Figure S5. True recall and precision (determined with AMBER) of bins recovered from the CAMI’s high,...
Figure S6. Completion of bins recovered from water, gut, and soil metagenomes with the metaWRAP-Bin_...
Figure S7. Contamination of bins recovered from water, gut, and soil metagenomes with the metaWRAP-B...
CAMI binning summary table. The number of bins recovered at different quality thresholds (determined...
Figure S4. Completion and contamination (determined with CheckM) of bins recovered from the CAMI’s h...
Figure S2. Logical workflow of the Bin_refinement modules of metaWRAP. The module takes in three bin...
Datasets used for testing MetaCRAM. This file has detailed descriptions of the 5 datasets used for t...
Table S1. The input functional gene APM data of eight typical environmental metagenomic samples. (TX...
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
A2metricTable.txt: REAPR, CEGMA and contiguity statistics reported for all Assemblathon2 metassembli...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Figure S1. Detailed walkthrough of the data files, software, databases, and custom scripts that meta...
Figure S8. Clustered heatmaps showing the log of bin abundance of bins extracted with metaWRAP-Bin_r...
Taxonomic distribution of reads from water, gut, and soil metagenomes, estimated with the metaWRAP-K...
Figure S9. MetaWRAP-Blobology visualization of water, gut, and soil metagenomes, showing the GC and ...
Figure S5. True recall and precision (determined with AMBER) of bins recovered from the CAMI’s high,...
Figure S6. Completion of bins recovered from water, gut, and soil metagenomes with the metaWRAP-Bin_...
Figure S7. Contamination of bins recovered from water, gut, and soil metagenomes with the metaWRAP-B...
CAMI binning summary table. The number of bins recovered at different quality thresholds (determined...
Figure S4. Completion and contamination (determined with CheckM) of bins recovered from the CAMI’s h...
Figure S2. Logical workflow of the Bin_refinement modules of metaWRAP. The module takes in three bin...
Datasets used for testing MetaCRAM. This file has detailed descriptions of the 5 datasets used for t...
Table S1. The input functional gene APM data of eight typical environmental metagenomic samples. (TX...
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
A2metricTable.txt: REAPR, CEGMA and contiguity statistics reported for all Assemblathon2 metassembli...
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