Figure S4. Completion and contamination (determined with CheckM) of bins recovered from the CAMI’s high, medium, and low complexity synthetic data sets using original binning software (metaBAT2, MaxBin2, CONCOCT) and software consolidating the original sets (DAS_Tool, Binning_refiner, metaWRAP). Only bins with ≥ 50% completion and ≤ 10% contamination are shown. (EPS 474 kb
Taxonomic distribution of reads from water, gut, and soil metagenomes, estimated with the metaWRAP-K...
Metagenome assembled genomes (MAGs) generated by taking raw reads from 58 samples that were quality-...
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome data, but a...
Figure S5. True recall and precision (determined with AMBER) of bins recovered from the CAMI’s high,...
Figure S6. Completion of bins recovered from water, gut, and soil metagenomes with the metaWRAP-Bin_...
Figure S7. Contamination of bins recovered from water, gut, and soil metagenomes with the metaWRAP-B...
CAMI binning summary table. The number of bins recovered at different quality thresholds (determined...
Figure S2. Logical workflow of the Bin_refinement modules of metaWRAP. The module takes in three bin...
Figure S8. Clustered heatmaps showing the log of bin abundance of bins extracted with metaWRAP-Bin_r...
Figure S1. Detailed walkthrough of the data files, software, databases, and custom scripts that meta...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
Figure S9. MetaWRAP-Blobology visualization of water, gut, and soil metagenomes, showing the GC and ...
Module runtime. The total real runtime of each module of metaWRAP when analyzing three samples from ...
Abstract Background The study of microbiomes using whole-metagenome shotgun sequencing enables the a...
Taxonomic distribution of reads from water, gut, and soil metagenomes, estimated with the metaWRAP-K...
Metagenome assembled genomes (MAGs) generated by taking raw reads from 58 samples that were quality-...
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome data, but a...
Figure S5. True recall and precision (determined with AMBER) of bins recovered from the CAMI’s high,...
Figure S6. Completion of bins recovered from water, gut, and soil metagenomes with the metaWRAP-Bin_...
Figure S7. Contamination of bins recovered from water, gut, and soil metagenomes with the metaWRAP-B...
CAMI binning summary table. The number of bins recovered at different quality thresholds (determined...
Figure S2. Logical workflow of the Bin_refinement modules of metaWRAP. The module takes in three bin...
Figure S8. Clustered heatmaps showing the log of bin abundance of bins extracted with metaWRAP-Bin_r...
Figure S1. Detailed walkthrough of the data files, software, databases, and custom scripts that meta...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
Figure S9. MetaWRAP-Blobology visualization of water, gut, and soil metagenomes, showing the GC and ...
Module runtime. The total real runtime of each module of metaWRAP when analyzing three samples from ...
Abstract Background The study of microbiomes using whole-metagenome shotgun sequencing enables the a...
Taxonomic distribution of reads from water, gut, and soil metagenomes, estimated with the metaWRAP-K...
Metagenome assembled genomes (MAGs) generated by taking raw reads from 58 samples that were quality-...
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome data, but a...