Figure S8. Clustered heatmaps showing the log of bin abundance of bins extracted with metaWRAP-Bin_refinement (-c 50 -x 10) across samples in water, gut, and soil metagenomes, calculated and plotted with metaWRAPâs Quant_bins module. (PNG 974 kb
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
Phylogenetic tree in Newick format including all complete prokaryotic genomes in NCBI [ 112 ], all a...
Abstract Background The study of microbiomes using whole-metagenome shotgun sequencing enables the a...
Figure S9. MetaWRAP-Blobology visualization of water, gut, and soil metagenomes, showing the GC and ...
Figure S1. Detailed walkthrough of the data files, software, databases, and custom scripts that meta...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Figure S6. Completion of bins recovered from water, gut, and soil metagenomes with the metaWRAP-Bin_...
Taxonomic distribution of reads from water, gut, and soil metagenomes, estimated with the metaWRAP-K...
Figure S7. Contamination of bins recovered from water, gut, and soil metagenomes with the metaWRAP-B...
Figure S2. Logical workflow of the Bin_refinement modules of metaWRAP. The module takes in three bin...
Module runtime. The total real runtime of each module of metaWRAP when analyzing three samples from ...
Figure S4. Completion and contamination (determined with CheckM) of bins recovered from the CAMI’s h...
Figure S5. True recall and precision (determined with AMBER) of bins recovered from the CAMI’s high,...
CAMI binning summary table. The number of bins recovered at different quality thresholds (determined...
Table S11. Ratio estimates of metatranscriptome (MT) and metagenome (MG) read mapping results for in...
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
Phylogenetic tree in Newick format including all complete prokaryotic genomes in NCBI [ 112 ], all a...
Abstract Background The study of microbiomes using whole-metagenome shotgun sequencing enables the a...
Figure S9. MetaWRAP-Blobology visualization of water, gut, and soil metagenomes, showing the GC and ...
Figure S1. Detailed walkthrough of the data files, software, databases, and custom scripts that meta...
Supplementary methods. Descriptions of analysis pipelines to process the benchmarking data, and deta...
Figure S6. Completion of bins recovered from water, gut, and soil metagenomes with the metaWRAP-Bin_...
Taxonomic distribution of reads from water, gut, and soil metagenomes, estimated with the metaWRAP-K...
Figure S7. Contamination of bins recovered from water, gut, and soil metagenomes with the metaWRAP-B...
Figure S2. Logical workflow of the Bin_refinement modules of metaWRAP. The module takes in three bin...
Module runtime. The total real runtime of each module of metaWRAP when analyzing three samples from ...
Figure S4. Completion and contamination (determined with CheckM) of bins recovered from the CAMI’s h...
Figure S5. True recall and precision (determined with AMBER) of bins recovered from the CAMI’s high,...
CAMI binning summary table. The number of bins recovered at different quality thresholds (determined...
Table S11. Ratio estimates of metatranscriptome (MT) and metagenome (MG) read mapping results for in...
Figure S3. Logical workflow of the Reassemble_bins module, which extracts reads belonging to bins in...
Phylogenetic tree in Newick format including all complete prokaryotic genomes in NCBI [ 112 ], all a...
Abstract Background The study of microbiomes using whole-metagenome shotgun sequencing enables the a...
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