Figure S1. RNA-Seq library statistics. The following parameters were evaluated for all analyzed reprogramming endpoint RNA-Seq data sets and shown as bar-and-whisker plots, grouped by study: (A) number of reads, (B) read length, (C) percent mapped reads, (D) percent uniquely mapped reads. The Sequence Read Archive accessions for each study are indicated on the y axes. Medians are indicated as thick black horizontal lines. The lower and upper limits of boxes denote the first and third quartile, respectively, while whiskers indicate the 5th (bottom) and 95th (top) percentiles. Where applicable, outliers are indicated as circles. (PDF 17 kb
Number of significant genes by number of biological replicates. Bar represents average number of sig...
Performance assessment of single-cell RNA-seq data. Histograms of A singlecell frequencies in the nu...
Figure S1. RNA-seq quality detection of differential regulated genes in air and ethylene treatment. ...
RNA-Seq sample table. The file contains an XLSX spreadsheet of the RNA-Seq data sets used in this st...
Table of comparisons for differential analyses. The file contains an XLSX spreadsheet describing sam...
Raw data. Raw data values for relevant experiments are summarized in an XLSX spreadsheet. Data from ...
Figure S4. Mouse reprogramming time course. As in Figure S3 but data is from mouse embryonic fibrobl...
Data set 1. Transcript expression across human RNA-Seq samples: estimated read counts. The file cont...
Figure S2. Distribution of gene expression changes. (A) Absolute log2 fold changes in gene expressio...
Figure S3. Human reprogramming time course. The expression profile of splicing factors from Fig. 2a ...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Control dataset sample identification, protocol information, and RNA sequencing stats. Experimental ...
<p>(A) Insert size histogram of sequenced cDNA fragments inferred from mapped paired-end reads. The ...
Figure S6. RNA processing factors with consistent changes in gene expression. (A and B) As in Fig. 2...
Top ranked alternative splicing events for human and mouse reprogramming. The file contains an XLSX ...
Number of significant genes by number of biological replicates. Bar represents average number of sig...
Performance assessment of single-cell RNA-seq data. Histograms of A singlecell frequencies in the nu...
Figure S1. RNA-seq quality detection of differential regulated genes in air and ethylene treatment. ...
RNA-Seq sample table. The file contains an XLSX spreadsheet of the RNA-Seq data sets used in this st...
Table of comparisons for differential analyses. The file contains an XLSX spreadsheet describing sam...
Raw data. Raw data values for relevant experiments are summarized in an XLSX spreadsheet. Data from ...
Figure S4. Mouse reprogramming time course. As in Figure S3 but data is from mouse embryonic fibrobl...
Data set 1. Transcript expression across human RNA-Seq samples: estimated read counts. The file cont...
Figure S2. Distribution of gene expression changes. (A) Absolute log2 fold changes in gene expressio...
Figure S3. Human reprogramming time course. The expression profile of splicing factors from Fig. 2a ...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Control dataset sample identification, protocol information, and RNA sequencing stats. Experimental ...
<p>(A) Insert size histogram of sequenced cDNA fragments inferred from mapped paired-end reads. The ...
Figure S6. RNA processing factors with consistent changes in gene expression. (A and B) As in Fig. 2...
Top ranked alternative splicing events for human and mouse reprogramming. The file contains an XLSX ...
Number of significant genes by number of biological replicates. Bar represents average number of sig...
Performance assessment of single-cell RNA-seq data. Histograms of A singlecell frequencies in the nu...
Figure S1. RNA-seq quality detection of differential regulated genes in air and ethylene treatment. ...