Figure S6. RNA processing factors with consistent changes in gene expression. (A and B) As in Fig. 2a and b, respectively, but for genes (y axis; human gene symbol used) associated with GO term “RNA processing” (GO:0006396) and its children. Symbols of genes not associated with GO term “RNA splicing” (GO:0008380), which is a descendent of “RNA processing”, are highlighted (maroon). In contrast to Fig. 2a, splicing factors previously implicated in somatic cell reprogramming are only included if they exceeded the expression and fold change cut-offs. (PDF 82 kb
Altered splicing of transcripts encoding proteins required for mitotic progression after PRPF8 deple...
Table of comparisons for differential analyses. The file contains an XLSX spreadsheet describing sam...
Abstract Background Along with the reorganization of epigenetic and transcriptional networks, somati...
Figure S8. Analysis of alternative splicing. (A and B) As in Fig. 1a and b, but instead of gene expr...
Figure S2. Distribution of gene expression changes. (A) Absolute log2 fold changes in gene expressio...
Figure S5. Changes in splicing factor expression in cancers. Fold changes in expression of individua...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Figure S3. Human reprogramming time course. The expression profile of splicing factors from Fig. 2a ...
Figure S10. Impact of Esrp1/2 overexpression on selected splicing events. TNG-MKOS-MEFs transduced w...
Figure S4. Mouse reprogramming time course. As in Figure S3 but data is from mouse embryonic fibrobl...
Top ranked alternative splicing events for human and mouse reprogramming. The file contains an XLSX ...
Raw data. Raw data values for relevant experiments are summarized in an XLSX spreadsheet. Data from ...
Figure S7. In vitro characterization of iPSCs. (A) qRT-PCR measurements of Esrp1/2 expression 4 days...
Figure S3. Showing digital mRNA expression from RNA-sequencing. (A) Hierarchical clustering (heat ma...
Inefficiently spliced introns and exons that are differentially used do not have weaker 3′ splice si...
Altered splicing of transcripts encoding proteins required for mitotic progression after PRPF8 deple...
Table of comparisons for differential analyses. The file contains an XLSX spreadsheet describing sam...
Abstract Background Along with the reorganization of epigenetic and transcriptional networks, somati...
Figure S8. Analysis of alternative splicing. (A and B) As in Fig. 1a and b, but instead of gene expr...
Figure S2. Distribution of gene expression changes. (A) Absolute log2 fold changes in gene expressio...
Figure S5. Changes in splicing factor expression in cancers. Fold changes in expression of individua...
Gene set enrichment analysis of SRP016568. The file contains an XLSX spreadsheet summarizing the top...
Figure S3. Human reprogramming time course. The expression profile of splicing factors from Fig. 2a ...
Figure S10. Impact of Esrp1/2 overexpression on selected splicing events. TNG-MKOS-MEFs transduced w...
Figure S4. Mouse reprogramming time course. As in Figure S3 but data is from mouse embryonic fibrobl...
Top ranked alternative splicing events for human and mouse reprogramming. The file contains an XLSX ...
Raw data. Raw data values for relevant experiments are summarized in an XLSX spreadsheet. Data from ...
Figure S7. In vitro characterization of iPSCs. (A) qRT-PCR measurements of Esrp1/2 expression 4 days...
Figure S3. Showing digital mRNA expression from RNA-sequencing. (A) Hierarchical clustering (heat ma...
Inefficiently spliced introns and exons that are differentially used do not have weaker 3′ splice si...
Altered splicing of transcripts encoding proteins required for mitotic progression after PRPF8 deple...
Table of comparisons for differential analyses. The file contains an XLSX spreadsheet describing sam...
Abstract Background Along with the reorganization of epigenetic and transcriptional networks, somati...