Additional file 4. Sequence variant genotyping quality for 18 and 31 animals that were sequenced at a lower and higher than 12-fold sequencing coverage, respectively. Asterisks denote significant differences (* P ≤ 0.05, ** P ≤ 0.01, *** P ≤ 0.001) with the best value (italic) for a respective parameter
Additional file 2: Table S2. Number of variants in different MAF classes, imputation accuracy for di...
Background: Genome- and population-wide re-sequencing would allow for most efficient detection of ca...
Additional file 5: Table S1. Posterior standard deviations of genomic correlations between breeds. A...
Additional file 2. Properties of the different metrics used for the evaluation of sequence variant g...
Additional file 7. Accuracy and sensitivity of sequence variant genotyping on bovine chromosome 25 f...
Additional file 1. Instruction to compile a Graphtyper version modified for the cattle chromosome c...
Additional file 3. Concordance of heterozygous and alternate homozygous genotypes in 49 Original B...
Additional file 5. Twelve 1-Mb regions for which Graphtyper initially failed to genotype sequence va...
Additional file 6. Comparison of variant filtration using either GATK hard filtering or GATK VQSR
International audienceAbstractBackgroundGenotyping of sequence variants typically involves, as a fir...
Additional file 1: Figure S1. Principal component analysis in 1577 sequenced animals. aâc Plot of ...
Additional file 6: Figure S5. Detailed view of a milk fat percentage QTL on bovine chromosome 16. Di...
Background The current bovine genomic reference sequence was assembled from a Hereford cow. The res...
Additional file 4: Figure S1. Manhattan plot for association of SNPs with stature in Nordic Holstein...
Background Genome- and population-wide re-sequencing would allow for most efficient detection of ca...
Additional file 2: Table S2. Number of variants in different MAF classes, imputation accuracy for di...
Background: Genome- and population-wide re-sequencing would allow for most efficient detection of ca...
Additional file 5: Table S1. Posterior standard deviations of genomic correlations between breeds. A...
Additional file 2. Properties of the different metrics used for the evaluation of sequence variant g...
Additional file 7. Accuracy and sensitivity of sequence variant genotyping on bovine chromosome 25 f...
Additional file 1. Instruction to compile a Graphtyper version modified for the cattle chromosome c...
Additional file 3. Concordance of heterozygous and alternate homozygous genotypes in 49 Original B...
Additional file 5. Twelve 1-Mb regions for which Graphtyper initially failed to genotype sequence va...
Additional file 6. Comparison of variant filtration using either GATK hard filtering or GATK VQSR
International audienceAbstractBackgroundGenotyping of sequence variants typically involves, as a fir...
Additional file 1: Figure S1. Principal component analysis in 1577 sequenced animals. aâc Plot of ...
Additional file 6: Figure S5. Detailed view of a milk fat percentage QTL on bovine chromosome 16. Di...
Background The current bovine genomic reference sequence was assembled from a Hereford cow. The res...
Additional file 4: Figure S1. Manhattan plot for association of SNPs with stature in Nordic Holstein...
Background Genome- and population-wide re-sequencing would allow for most efficient detection of ca...
Additional file 2: Table S2. Number of variants in different MAF classes, imputation accuracy for di...
Background: Genome- and population-wide re-sequencing would allow for most efficient detection of ca...
Additional file 5: Table S1. Posterior standard deviations of genomic correlations between breeds. A...