The summary of each sequencing pools. The raw reads number, clean reads number, sequencing depth, Q30 percentage, and coverage et al. for each sequencing library were provided. (XLSX 14 kb
Table S1. The distribution of SNPs and average distances between neighboring SNPs. (DOCX 17 kb
Lists of information containing all the positively selected genes in chicken breeds. (XLSX 1018 kb
Figure S1. Imputation accuracy in different total X obtained with FImpute and Beagle against 4 chrom...
The loci information for the 55K array. The loci, allele information, SNPs frequencies in each breed...
The third group of SNPs which related to 861 candidate genes. The information of 861 candidate genes...
The third group of SNPs which related to serum IgY. The loci and allele information of 0.8âK SNPs ...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
Table S1. A pedigree-based genetic relationship matrix among the 24 key individuals. Table S2 A summ...
Number of variants identified by GATK, SAMtools and freebayes in the layer chicken genome. (XLSX 13Â...
Boxplot of genotype concordance, non-reference sensitivity, non-reference genotype concordance and p...
Percentage of genotyped individuals having a high relationship ≥ 0.25 (or 0.5) with at least one of ...
Different genotype concordance metrics. 0, 1, and 2 is the number of non-reference allele. NA is SNP...
Mapping of the dissected lampbrush chromosome 2 regions to chicken genome using high-throughput sequ...
Primers used for qRT-PCR. The first column indicates primer names and the second column shows sequen...
Figure S1. SNP density and distribution across the genome (after quality control). (TIF 2605 kb
Table S1. The distribution of SNPs and average distances between neighboring SNPs. (DOCX 17 kb
Lists of information containing all the positively selected genes in chicken breeds. (XLSX 1018 kb
Figure S1. Imputation accuracy in different total X obtained with FImpute and Beagle against 4 chrom...
The loci information for the 55K array. The loci, allele information, SNPs frequencies in each breed...
The third group of SNPs which related to 861 candidate genes. The information of 861 candidate genes...
The third group of SNPs which related to serum IgY. The loci and allele information of 0.8âK SNPs ...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
Table S1. A pedigree-based genetic relationship matrix among the 24 key individuals. Table S2 A summ...
Number of variants identified by GATK, SAMtools and freebayes in the layer chicken genome. (XLSX 13Â...
Boxplot of genotype concordance, non-reference sensitivity, non-reference genotype concordance and p...
Percentage of genotyped individuals having a high relationship ≥ 0.25 (or 0.5) with at least one of ...
Different genotype concordance metrics. 0, 1, and 2 is the number of non-reference allele. NA is SNP...
Mapping of the dissected lampbrush chromosome 2 regions to chicken genome using high-throughput sequ...
Primers used for qRT-PCR. The first column indicates primer names and the second column shows sequen...
Figure S1. SNP density and distribution across the genome (after quality control). (TIF 2605 kb
Table S1. The distribution of SNPs and average distances between neighboring SNPs. (DOCX 17 kb
Lists of information containing all the positively selected genes in chicken breeds. (XLSX 1018 kb
Figure S1. Imputation accuracy in different total X obtained with FImpute and Beagle against 4 chrom...
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