Percentage of genotyped individuals having a high relationship ≥ 0.25 (or 0.5) with at least one of sequenced individual. (PNG 65 kb
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...
Figure S2. Manhattan plots showing the association of all SNPs with beak deformity trait using PLINK...
Number of variants identified by GATK, SAMtools and freebayes in the layer chicken genome. (XLSX 13Â...
Different genotype concordance metrics. 0, 1, and 2 is the number of non-reference allele. NA is SNP...
Boxplot of genotype concordance, non-reference sensitivity, non-reference genotype concordance and p...
Table S1. A pedigree-based genetic relationship matrix among the 24 key individuals. Table S2 A summ...
The third group of SNPs which related to 861 candidate genes. The information of 861 candidate genes...
Figure S1. Imputation accuracy in different total X obtained with FImpute and Beagle against 4 chrom...
The loci information for the 55K array. The loci, allele information, SNPs frequencies in each breed...
Table S3. Differences in measures of homozygosity between individuals among 9 sub-populations in thr...
Table S3. The inbreeding coefficient (F) for all 30 samples using 155,216 high quality SNPs. (XLSX 1...
The third group of SNPs which related to serum IgY. The loci and allele information of 0.8âK SNPs ...
The phenotypic distributions of the four different genotype classes for the most significant AA effe...
Background: The technical progress in the last decade has made it possible to sequence millions of D...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...
Figure S2. Manhattan plots showing the association of all SNPs with beak deformity trait using PLINK...
Number of variants identified by GATK, SAMtools and freebayes in the layer chicken genome. (XLSX 13Â...
Different genotype concordance metrics. 0, 1, and 2 is the number of non-reference allele. NA is SNP...
Boxplot of genotype concordance, non-reference sensitivity, non-reference genotype concordance and p...
Table S1. A pedigree-based genetic relationship matrix among the 24 key individuals. Table S2 A summ...
The third group of SNPs which related to 861 candidate genes. The information of 861 candidate genes...
Figure S1. Imputation accuracy in different total X obtained with FImpute and Beagle against 4 chrom...
The loci information for the 55K array. The loci, allele information, SNPs frequencies in each breed...
Table S3. Differences in measures of homozygosity between individuals among 9 sub-populations in thr...
Table S3. The inbreeding coefficient (F) for all 30 samples using 155,216 high quality SNPs. (XLSX 1...
The third group of SNPs which related to serum IgY. The loci and allele information of 0.8âK SNPs ...
The phenotypic distributions of the four different genotype classes for the most significant AA effe...
Background: The technical progress in the last decade has made it possible to sequence millions of D...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...
Figure S2. Manhattan plots showing the association of all SNPs with beak deformity trait using PLINK...