Figure S2. Manhattan plots showing the association of all SNPs with beak deformity trait using PLINK. SNPs are plotted on the x-axis according to their positions on each chromosome against their association with this trait on the y-axis (shown as -log10 (P-value)). The red dashed line indicates suggestive genome-wide significance (P-valueâ=â4.55E-5). (TIF 2715 kb
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
Table S1 GO analysis of the candidate genes. Table S2 Biological pathways of the candidate genes. Ta...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
Figure S1. Significance of the pathway (âlog10 (PEMP-value)) versus: (a) the number of significant...
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
Table S5. The detailed lists of pathways and SNPs information used in the pathway-based association ...
Table S3. The detailed information of each pathway based on the pathway-based association analysis. ...
Figure S1 Manhattan plots showing associations of all SNPs with all traits (a. NL, b. FBL, c. BrW, d...
Manhattan plot of the SNP effect distribution within each significant window for skin percentage (SK...
Manhattan plot of the SNP effect distribution within each significant window for skin weight (SKINW)...
Manhattan plot of the SNP effect distribution within each significant window for abdominal fat perce...
Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
Plot of the density of SNPs per Mbp in each autosomal chromosome after filtration. (DOCX 155 kb
An excel file with the characterization of all the SNP windows analyzed including the proportion of ...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
Table S1 GO analysis of the candidate genes. Table S2 Biological pathways of the candidate genes. Ta...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
Figure S1. Significance of the pathway (âlog10 (PEMP-value)) versus: (a) the number of significant...
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
Table S5. The detailed lists of pathways and SNPs information used in the pathway-based association ...
Table S3. The detailed information of each pathway based on the pathway-based association analysis. ...
Figure S1 Manhattan plots showing associations of all SNPs with all traits (a. NL, b. FBL, c. BrW, d...
Manhattan plot of the SNP effect distribution within each significant window for skin percentage (SK...
Manhattan plot of the SNP effect distribution within each significant window for skin weight (SKINW)...
Manhattan plot of the SNP effect distribution within each significant window for abdominal fat perce...
Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
Plot of the density of SNPs per Mbp in each autosomal chromosome after filtration. (DOCX 155 kb
An excel file with the characterization of all the SNP windows analyzed including the proportion of ...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
Table S1 GO analysis of the candidate genes. Table S2 Biological pathways of the candidate genes. Ta...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...