Manhattan plot of the SNP effect distribution within each significant window for abdominal fat percentage (ABFP). The X-axis represents the significant SNP window represented by the number of the respective chromosome and Y-axis shows the SNP effect from Bayes B analysis. Their respective start and end positions are: GGA5 (38,000,437–38,996,916 bp); GGA10 (7,000,336–7,998,549 bp); GGA13 (3,002,617–3,998,616 bp); GGA26 (1,002,598–1,999,851 bp). (DOCX 1425 kb
Table S5. The detailed lists of pathways and SNPs information used in the pathway-based association ...
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
Figure S1 Manhattan plots showing associations of all SNPs with all traits (a. NL, b. FBL, c. BrW, d...
Manhattan plot of the SNP effect distribution within each significant window for skin weight (SKINW)...
Manhattan plot of the SNP effect distribution within each significant window for skin percentage (SK...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
An excel file with the characterization of all the SNP windows analyzed including the proportion of ...
Plot of the density of SNPs per Mbp in each autosomal chromosome after filtration. (DOCX 155 kb
Figure S2. Manhattan plots showing the association of all SNPs with beak deformity trait using PLINK...
Figure S1. Significance of the pathway (âlog10 (PEMP-value)) versus: (a) the number of significant...
Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...
The phenotypic distributions of the four different genotype classes for the most significant AA effe...
Table S3. The detailed information of each pathway based on the pathway-based association analysis. ...
A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...
Table S5. The detailed lists of pathways and SNPs information used in the pathway-based association ...
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
Figure S1 Manhattan plots showing associations of all SNPs with all traits (a. NL, b. FBL, c. BrW, d...
Manhattan plot of the SNP effect distribution within each significant window for skin weight (SKINW)...
Manhattan plot of the SNP effect distribution within each significant window for skin percentage (SK...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
Manhattan plot of the posterior means of the proportion of genetic variance explained by each 1-Mb S...
An excel file with the characterization of all the SNP windows analyzed including the proportion of ...
Plot of the density of SNPs per Mbp in each autosomal chromosome after filtration. (DOCX 155 kb
Figure S2. Manhattan plots showing the association of all SNPs with beak deformity trait using PLINK...
Figure S1. Significance of the pathway (âlog10 (PEMP-value)) versus: (a) the number of significant...
Summary of genome-wide significant SNPs with respect to nine egg weights by univariate GWAS. Table S...
The phenotypic distributions of the four different genotype classes for the most significant AA effe...
Table S3. The detailed information of each pathway based on the pathway-based association analysis. ...
A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...
Table S5. The detailed lists of pathways and SNPs information used in the pathway-based association ...
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
Figure S1 Manhattan plots showing associations of all SNPs with all traits (a. NL, b. FBL, c. BrW, d...