The third group of SNPs which related to serum IgY. The loci and allele information of 0.8âK SNPs related to serum IgY were provided. (XLSX 32 kb
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
List of ASE genes used for comparison (Table S6) and Overlap between line-specific CNVRs of high fre...
Manhattan plot of the SNP effect distribution within each significant window for skin percentage (SK...
The third group of SNPs which related to 861 candidate genes. The information of 861 candidate genes...
The loci information for the 55K array. The loci, allele information, SNPs frequencies in each breed...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
Table S1. A pedigree-based genetic relationship matrix among the 24 key individuals. Table S2 A summ...
The summary of each sequencing pools. The raw reads number, clean reads number, sequencing depth, Q3...
Percentage of genotyped individuals having a high relationship ≥ 0.25 (or 0.5) with at least one of ...
A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...
The phenotypic distributions of the four different genotype classes for the most significant AA effe...
Table S3. The inbreeding coefficient (F) for all 30 samples using 155,216 high quality SNPs. (XLSX 1...
Number of variants identified by GATK, SAMtools and freebayes in the layer chicken genome. (XLSX 13Â...
Lists of information containing all the positively selected genes in chicken breeds. (XLSX 1018 kb
Different genotype concordance metrics. 0, 1, and 2 is the number of non-reference allele. NA is SNP...
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
List of ASE genes used for comparison (Table S6) and Overlap between line-specific CNVRs of high fre...
Manhattan plot of the SNP effect distribution within each significant window for skin percentage (SK...
The third group of SNPs which related to 861 candidate genes. The information of 861 candidate genes...
The loci information for the 55K array. The loci, allele information, SNPs frequencies in each breed...
The second group of SNPs which related to the economic traits. The locus and the p-value of SNPs whi...
Table S1. A pedigree-based genetic relationship matrix among the 24 key individuals. Table S2 A summ...
The summary of each sequencing pools. The raw reads number, clean reads number, sequencing depth, Q3...
Percentage of genotyped individuals having a high relationship ≥ 0.25 (or 0.5) with at least one of ...
A figure with the substitution types of SNPs initially identified from the 28 chickens (broiler and ...
The phenotypic distributions of the four different genotype classes for the most significant AA effe...
Table S3. The inbreeding coefficient (F) for all 30 samples using 155,216 high quality SNPs. (XLSX 1...
Number of variants identified by GATK, SAMtools and freebayes in the layer chicken genome. (XLSX 13Â...
Lists of information containing all the positively selected genes in chicken breeds. (XLSX 1018 kb
Different genotype concordance metrics. 0, 1, and 2 is the number of non-reference allele. NA is SNP...
Table S4. The detailed lists of all the chicken pathways used in the pathway-based association analy...
List of ASE genes used for comparison (Table S6) and Overlap between line-specific CNVRs of high fre...
Manhattan plot of the SNP effect distribution within each significant window for skin percentage (SK...
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