Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Additional file 1: of The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)

Huijun Jiao (4355035)
Xing Liu (221084)
Shuguang Sun (2965044)
Peng Wang (34436)
Xin Qiao (1625608)
Jiaming Li (543737)
Chao Tang (10925)
Juyou Wu (4355032)
Shaoling Zhang (430456)
Shutian Tao (4425943)

February 2018

Table S1. Genomic annotations and classifications of HRGPs in pear. SP refers to signal peptide; GPI...

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 9: of Diversification and independent domestication of Asian and European pears

Jun Wu (4002)
Yingtao Wang (5369336)
Jiabao Xu (436580)
Schuyler Korban (5369330)
Zhangjun Fei (14143)
Shutian Tao (4425943)
Ray Ming (591215)
Shuaishuai Tai (3417530)
Awais Khan (4027952)
Joseph Postman (5369321)
Chao Gu (402478)
Hao Yin (381910)
Danman Zheng (5369327)
Kaijie Qi (4425949)
Yong Li (15029)
Runze Wang (4425946)
Cecilia Deng (546631)
Satish Kumar (37582)
David ChagnĂŠ (3556253)
Xiaolong Li (552024)
Juyou Wu (4355032)
Xiaosan Huang (3365024)
Huping Zhang (4355038)
Zhihua Xie (2688265)
Xiao Li (107004)
Mingyue Zhang (301754)
Yanhong Li (661033)
Zhen Yue (535779)
Xiaodong Fang (146960)
Jiaming Li (543737)
Leiting Li (3445646)
Cong Jin (158700)
Mengfan Qin (5369339)
Jiaying Zhang (585596)
Xiao Wu (158273)
Yaqi Ke (5369324)
Jian Wang (5901)
Huanmimg Yang (5369333)
Shaoling Zhang (430456)

June 2018

List of domesticated genes within QTL regions and association SNPs. (XLSX 62Â kb

Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing t...

Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequ...

Additional file 11: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S9. Polymorphism information of 18 primers in 44 pear cultivars. (XLSX 10Â kb

Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb

Additional file 1: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S1. Percentages of different motifs among mono-(a), di- (b) and tri- (c) nucleotide repeats i...

Additional file 10: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S2. Amplified fragments of Pb3L11N5758 and Pb3L4N5130 SSR loci from five pear varieties. (PDF...

Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue
Pujuan Zhang
Ting Shi
Jian Yang
Long Wang
Suke Wang
Yanli Su
Huirong Zhang
Yushan Qiao
Xiugen Li

June 2018

Abstract Background Pear (Pyrus spp.) is an economically important temperate fruit tree worldwide. I...

Additional file 1: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The seven pairs of primer sequences for amplifying functional genes in group III for qRT-PCR analysi...

Additional file 1: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Table S1. Statistics of sequencing data for the crosses MTH × HXS and YLX × MTH. Table S2. Details o...

Additional file 5: of Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

Sara Montanari (470398)
Luca Bianco (427478)
Brian Allen (6661181)
Pedro Martínez-García (6661184)
Nahla Bassil (110538)
Joseph Postman (5369321)
Mareike Knäbel (470400)
Biff Kitson (6661187)
Cecilia Deng (546631)
David Chagné (3403745)
Marc Crepeau (453607)
Charles Langley (6661190)
Kate Evans (379703)
Amit Dhingra (93307)
Michela Troggio (83147)
David Neale (2836163)

May 2019

Distribution of the SNPs of the Axiom™ 70 K Pear Genotyping Array on the pear genomes. The number of...

Additional file 2: Table S1. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

Ka/Ks analysis and divergence time estimated for pear duplicated BBX paralogs. (XLSX 11Â kb

Additional file 2: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...

Additional file 1: of The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)

Huijun Jiao (4355035)
Xing Liu (221084)
Shuguang Sun (2965044)
Peng Wang (34436)
Xin Qiao (1625608)
Jiaming Li (543737)
Chao Tang (10925)
Juyou Wu (4355032)
Shaoling Zhang (430456)
Shutian Tao (4425943)

February 2018

Table S1. Genomic annotations and classifications of HRGPs in pear. SP refers to signal peptide; GPI...

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 9: of Diversification and independent domestication of Asian and European pears

Jun Wu (4002)
Yingtao Wang (5369336)
Jiabao Xu (436580)
Schuyler Korban (5369330)
Zhangjun Fei (14143)
Shutian Tao (4425943)
Ray Ming (591215)
Shuaishuai Tai (3417530)
Awais Khan (4027952)
Joseph Postman (5369321)
Chao Gu (402478)
Hao Yin (381910)
Danman Zheng (5369327)
Kaijie Qi (4425949)
Yong Li (15029)
Runze Wang (4425946)
Cecilia Deng (546631)
Satish Kumar (37582)
David ChagnĂŠ (3556253)
Xiaolong Li (552024)
Juyou Wu (4355032)
Xiaosan Huang (3365024)
Huping Zhang (4355038)
Zhihua Xie (2688265)
Xiao Li (107004)
Mingyue Zhang (301754)
Yanhong Li (661033)
Zhen Yue (535779)
Xiaodong Fang (146960)
Jiaming Li (543737)
Leiting Li (3445646)
Cong Jin (158700)
Mengfan Qin (5369339)
Jiaying Zhang (585596)
Xiao Wu (158273)
Yaqi Ke (5369324)
Jian Wang (5901)
Huanmimg Yang (5369333)
Shaoling Zhang (430456)

June 2018

List of domesticated genes within QTL regions and association SNPs. (XLSX 62Â kb

Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing t...

Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequ...

Additional file 11: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S9. Polymorphism information of 18 primers in 44 pear cultivars. (XLSX 10Â kb

Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb

Additional file 1: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S1. Percentages of different motifs among mono-(a), di- (b) and tri- (c) nucleotide repeats i...

Additional file 10: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S2. Amplified fragments of Pb3L11N5758 and Pb3L4N5130 SSR loci from five pear varieties. (PDF...

Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue
Pujuan Zhang
Ting Shi
Jian Yang
Long Wang
Suke Wang
Yanli Su
Huirong Zhang
Yushan Qiao
Xiugen Li

June 2018

Abstract Background Pear (Pyrus spp.) is an economically important temperate fruit tree worldwide. I...

Additional file 1: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The seven pairs of primer sequences for amplifying functional genes in group III for qRT-PCR analysi...

Additional file 1: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Table S1. Statistics of sequencing data for the crosses MTH × HXS and YLX × MTH. Table S2. Details o...

Additional file 5: of Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

Sara Montanari (470398)
Luca Bianco (427478)
Brian Allen (6661181)
Pedro Martínez-García (6661184)
Nahla Bassil (110538)
Joseph Postman (5369321)
Mareike Knäbel (470400)
Biff Kitson (6661187)
Cecilia Deng (546631)
David Chagné (3403745)
Marc Crepeau (453607)
Charles Langley (6661190)
Kate Evans (379703)
Amit Dhingra (93307)
Michela Troggio (83147)
David Neale (2836163)

May 2019

Distribution of the SNPs of the Axiom™ 70 K Pear Genotyping Array on the pear genomes. The number of...

Additional file 2: Table S1. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

Ka/Ks analysis and divergence time estimated for pear duplicated BBX paralogs. (XLSX 11Â kb

Additional file 2: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...

Additional file 1: of The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)

Huijun Jiao (4355035)
Xing Liu (221084)
Shuguang Sun (2965044)
Peng Wang (34436)
Xin Qiao (1625608)
Jiaming Li (543737)
Chao Tang (10925)
Juyou Wu (4355032)
Shaoling Zhang (430456)
Shutian Tao (4425943)

February 2018

Table S1. Genomic annotations and classifications of HRGPs in pear. SP refers to signal peptide; GPI...

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 9: of Diversification and independent domestication of Asian and European pears

Jun Wu (4002)
Yingtao Wang (5369336)
Jiabao Xu (436580)
Schuyler Korban (5369330)
Zhangjun Fei (14143)
Shutian Tao (4425943)
Ray Ming (591215)
Shuaishuai Tai (3417530)
Awais Khan (4027952)
Joseph Postman (5369321)
Chao Gu (402478)
Hao Yin (381910)
Danman Zheng (5369327)
Kaijie Qi (4425949)
Yong Li (15029)
Runze Wang (4425946)
Cecilia Deng (546631)
Satish Kumar (37582)
David ChagnĂŠ (3556253)
Xiaolong Li (552024)
Juyou Wu (4355032)
Xiaosan Huang (3365024)
Huping Zhang (4355038)
Zhihua Xie (2688265)
Xiao Li (107004)
Mingyue Zhang (301754)
Yanhong Li (661033)
Zhen Yue (535779)
Xiaodong Fang (146960)
Jiaming Li (543737)
Leiting Li (3445646)
Cong Jin (158700)
Mengfan Qin (5369339)
Jiaying Zhang (585596)
Xiao Wu (158273)
Yaqi Ke (5369324)
Jian Wang (5901)
Huanmimg Yang (5369333)
Shaoling Zhang (430456)

June 2018

List of domesticated genes within QTL regions and association SNPs. (XLSX 62Â kb

Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Abstract

Extracted data

Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Abstract

Extracted data

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