Additional file 10: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 1: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The seven pairs of primer sequences for amplifying functional genes in group III for qRT-PCR analysi...

Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National Pyrus Collection

Sara Montanari
Joseph Postman
Nahla V. Bassil
David B. Neale

September 2020

The USDA-ARS National Clonal Germplasm Repository (NCGR) in Corvallis, Oregon, maintains one of the ...

Additional file 11: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S9. Polymorphism information of 18 primers in 44 pear cultivars. (XLSX 10Â kb

Additional file 1: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S1. Percentages of different motifs among mono-(a), di- (b) and tri- (c) nucleotide repeats i...

Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb

Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S8. Information of 332 good SSR primers, including information of the primer sequences, anneal...

Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing t...

Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequ...

Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue
Pujuan Zhang
Ting Shi
Jian Yang
Long Wang
Suke Wang
Yanli Su
Huirong Zhang
Yushan Qiao
Xiugen Li

June 2018

Abstract Background Pear (Pyrus spp.) is an economically important temperate fruit tree worldwide. I...

Additional file 2: Table S1. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

Ka/Ks analysis and divergence time estimated for pear duplicated BBX paralogs. (XLSX 11Â kb

Additional file 1: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Table S1. Statistics of sequencing data for the crosses MTH × HXS and YLX × MTH. Table S2. Details o...

Additional file 10 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 10: Table S10. SNPs, SNP density, and gene density of all 29,269 high-quality SNPs o...

Additional file 2: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...

Assessment of genetic structure among different pear species (Pyrus spp.) using apple-derived SSR and evidence of duplications in the pear genome

Javad Erfani-Moghadam
Abdolkarim Zarei

May 2018

Simple sequence repeat (SSRs) markers derived from Malus were used to assess their transferability i...

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 1: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The seven pairs of primer sequences for amplifying functional genes in group III for qRT-PCR analysi...

Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National Pyrus Collection

Sara Montanari
Joseph Postman
Nahla V. Bassil
David B. Neale

September 2020

The USDA-ARS National Clonal Germplasm Repository (NCGR) in Corvallis, Oregon, maintains one of the ...

Additional file 11: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S9. Polymorphism information of 18 primers in 44 pear cultivars. (XLSX 10Â kb

Additional file 1: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S1. Percentages of different motifs among mono-(a), di- (b) and tri- (c) nucleotide repeats i...

Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb

Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S8. Information of 332 good SSR primers, including information of the primer sequences, anneal...

Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing t...

Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequ...

Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue
Pujuan Zhang
Ting Shi
Jian Yang
Long Wang
Suke Wang
Yanli Su
Huirong Zhang
Yushan Qiao
Xiugen Li

June 2018

Abstract Background Pear (Pyrus spp.) is an economically important temperate fruit tree worldwide. I...

Additional file 2: Table S1. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

Ka/Ks analysis and divergence time estimated for pear duplicated BBX paralogs. (XLSX 11Â kb

Additional file 1: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Table S1. Statistics of sequencing data for the crosses MTH × HXS and YLX × MTH. Table S2. Details o...

Additional file 10 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 10: Table S10. SNPs, SNP density, and gene density of all 29,269 high-quality SNPs o...

Additional file 2: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...

Assessment of genetic structure among different pear species (Pyrus spp.) using apple-derived SSR and evidence of duplications in the pear genome

Javad Erfani-Moghadam
Abdolkarim Zarei

May 2018

Simple sequence repeat (SSRs) markers derived from Malus were used to assess their transferability i...

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 1: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The seven pairs of primer sequences for amplifying functional genes in group III for qRT-PCR analysi...

Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National Pyrus Collection

Sara Montanari
Joseph Postman
Nahla V. Bassil
David B. Neale

September 2020

The USDA-ARS National Clonal Germplasm Repository (NCGR) in Corvallis, Oregon, maintains one of the ...

Additional file 10: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Abstract

Extracted data

Additional file 10: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Abstract

Extracted data

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