Additional file 2: Table S1. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S8. Information of 332 good SSR primers, including information of the primer sequences, anneal...

Additional file 6: of Diversification and independent domestication of Asian and European pears

Jun Wu (4002)
Yingtao Wang (5369336)
Jiabao Xu (436580)
Schuyler Korban (5369330)
Zhangjun Fei (14143)
Shutian Tao (4425943)
Ray Ming (591215)
Shuaishuai Tai (3417530)
Awais Khan (4027952)
Joseph Postman (5369321)
Chao Gu (402478)
Hao Yin (381910)
Danman Zheng (5369327)
Kaijie Qi (4425949)
Yong Li (15029)
Runze Wang (4425946)
Cecilia Deng (546631)
Satish Kumar (37582)
David ChagnĂŠ (3556253)
Xiaolong Li (552024)
Juyou Wu (4355032)
Xiaosan Huang (3365024)
Huping Zhang (4355038)
Zhihua Xie (2688265)
Xiao Li (107004)
Mingyue Zhang (301754)
Yanhong Li (661033)
Zhen Yue (535779)
Xiaodong Fang (146960)
Jiaming Li (543737)
Leiting Li (3445646)
Cong Jin (158700)
Mengfan Qin (5369339)
Jiaying Zhang (585596)
Xiao Wu (158273)
Yaqi Ke (5369324)
Jian Wang (5901)
Huanmimg Yang (5369333)
Shaoling Zhang (430456)

June 2018

List of 47 genes in common selective sweeps of both Asian and European groups during domestication f...

Additional file 4: Figure S3. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

The gene expression of 12 PbBBX genes during pollen tube growth by qRT-PCR. The value on the left Y-...

Additional file 3: Figure S2. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

Expression profiles of PbBBX genes in pear pollen. P1, P2, P3, and P4 are represents mature dry poll...

Additional file 1: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S1. Percentages of different motifs among mono-(a), di- (b) and tri- (c) nucleotide repeats i...

Additional file 11: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S9. Polymorphism information of 18 primers in 44 pear cultivars. (XLSX 10Â kb

Additional file 10: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S2. Amplified fragments of Pb3L11N5758 and Pb3L4N5130 SSR loci from five pear varieties. (PDF...

Additional file 2: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The gene name, gene ID, domain description, start position, end position, chromosome, and gene lengt...

Additional file 2: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...

Additional file 1: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Table S1. Statistics of sequencing data for the crosses MTH × HXS and YLX × MTH. Table S2. Details o...

Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb

Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequ...

Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing t...

Additional file 1: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The seven pairs of primer sequences for amplifying functional genes in group III for qRT-PCR analysi...

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S8. Information of 332 good SSR primers, including information of the primer sequences, anneal...

Additional file 6: of Diversification and independent domestication of Asian and European pears

Jun Wu (4002)
Yingtao Wang (5369336)
Jiabao Xu (436580)
Schuyler Korban (5369330)
Zhangjun Fei (14143)
Shutian Tao (4425943)
Ray Ming (591215)
Shuaishuai Tai (3417530)
Awais Khan (4027952)
Joseph Postman (5369321)
Chao Gu (402478)
Hao Yin (381910)
Danman Zheng (5369327)
Kaijie Qi (4425949)
Yong Li (15029)
Runze Wang (4425946)
Cecilia Deng (546631)
Satish Kumar (37582)
David ChagnĂŠ (3556253)
Xiaolong Li (552024)
Juyou Wu (4355032)
Xiaosan Huang (3365024)
Huping Zhang (4355038)
Zhihua Xie (2688265)
Xiao Li (107004)
Mingyue Zhang (301754)
Yanhong Li (661033)
Zhen Yue (535779)
Xiaodong Fang (146960)
Jiaming Li (543737)
Leiting Li (3445646)
Cong Jin (158700)
Mengfan Qin (5369339)
Jiaying Zhang (585596)
Xiao Wu (158273)
Yaqi Ke (5369324)
Jian Wang (5901)
Huanmimg Yang (5369333)
Shaoling Zhang (430456)

June 2018

List of 47 genes in common selective sweeps of both Asian and European groups during domestication f...

Additional file 4: Figure S3. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

The gene expression of 12 PbBBX genes during pollen tube growth by qRT-PCR. The value on the left Y-...

Additional file 3: Figure S2. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Yunpeng Cao (3609377)
Yahui Han (4447462)
Dandan Meng (450970)
Dahui Li (4447465)
Chunyan Jiao (845258)
Qing Jin (408639)
Yi Lin (49406)
Yongping Cai (408640)

September 2017

Expression profiles of PbBBX genes in pear pollen. P1, P2, P3, and P4 are represents mature dry poll...

Additional file 1: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S1. Percentages of different motifs among mono-(a), di- (b) and tri- (c) nucleotide repeats i...

Additional file 11: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S9. Polymorphism information of 18 primers in 44 pear cultivars. (XLSX 10Â kb

Additional file 10: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Figure S2. Amplified fragments of Pb3L11N5758 and Pb3L4N5130 SSR loci from five pear varieties. (PDF...

Additional file 2: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The gene name, gene ID, domain description, start position, end position, chromosome, and gene lengt...

Additional file 2: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Figure S1. |Δ(SNP-index)| graph derived from the modified QTL-seq analysis of mapping for the red sk...

Additional file 1: of Chromosome level high-density integrated genetic maps improve the Pyrus bretschneideri ‘DangshanSuli’ v1.0 genome

Huabai Xue (4453972)
Suke Wang (4453966)
Jia-Long Yao (5106608)
Cecilia Deng (546631)
Long Wang (95893)
Yanli Su (303586)
Huirong Zhang (817570)
Huangkai Zhou (765531)
Minshan Sun (6002147)
Xiugen Li (4453969)
Jian Yang (12136)

November 2018

Table S1. Statistics of sequencing data for the crosses MTH × HXS and YLX × MTH. Table S2. Details o...

Additional file 6: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S5. Number of different types of SSR motifs in different LGs. (XLSX 10Â kb

Additional file 7: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S6. Information of new designed 101, 694 SSR primers, including information of the primer sequ...

Additional file 8: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S7. Information of 534 SSR primers, including information of the primer sequences, annealing t...

Additional file 1: of The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)

Xiaolong Li (552024)
Shutian Tao (4425943)
Shuwei Wei (4987472)
Meiling Ming (4987469)
Xiaosan Huang (3365024)
Shaoling Zhang (430456)
Jun Wu (4002)

March 2018

The seven pairs of primer sequences for amplifying functional genes in group III for qRT-PCR analysi...

Additional file 2 of An identical-by-descent segment harbors a 12-bp insertion determining fruit softening during domestication and speciation in Pyrus

Bobo Song (9403378)
Xiaolong Li (552024)
Beibei Cao (5568536)
Mingyue Zhang (301754)
Schuyler S. Korban (13893900)
Li’ang Yu (4388452)
Wenxi Yang (6893597)
Kejiao Zhao (9403381)
Jiaming Li (543737)
Jun Wu (11701441)

October 2022

Additional file 2: Table S2. Whole genome sequencing (WGS) data for 113 pear accessions used in our ...

Additional file 9: of Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear

Huabai Xue (4453972)
Pujuan Zhang (5413688)
Ting Shi (3955)
Jian Yang (12136)
Long Wang (95893)
Suke Wang (4453966)
Yanli Su (303586)
Huirong Zhang (817570)
Yushan Qiao (5413691)
Xiugen Li (4453969)

June 2018

Table S8. Information of 332 good SSR primers, including information of the primer sequences, anneal...

Additional file 6: of Diversification and independent domestication of Asian and European pears

Jun Wu (4002)
Yingtao Wang (5369336)
Jiabao Xu (436580)
Schuyler Korban (5369330)
Zhangjun Fei (14143)
Shutian Tao (4425943)
Ray Ming (591215)
Shuaishuai Tai (3417530)
Awais Khan (4027952)
Joseph Postman (5369321)
Chao Gu (402478)
Hao Yin (381910)
Danman Zheng (5369327)
Kaijie Qi (4425949)
Yong Li (15029)
Runze Wang (4425946)
Cecilia Deng (546631)
Satish Kumar (37582)
David ChagnĂŠ (3556253)
Xiaolong Li (552024)
Juyou Wu (4355032)
Xiaosan Huang (3365024)
Huping Zhang (4355038)
Zhihua Xie (2688265)
Xiao Li (107004)
Mingyue Zhang (301754)
Yanhong Li (661033)
Zhen Yue (535779)
Xiaodong Fang (146960)
Jiaming Li (543737)
Leiting Li (3445646)
Cong Jin (158700)
Mengfan Qin (5369339)
Jiaying Zhang (585596)
Xiao Wu (158273)
Yaqi Ke (5369324)
Jian Wang (5901)
Huanmimg Yang (5369333)
Shaoling Zhang (430456)

June 2018

List of 47 genes in common selective sweeps of both Asian and European groups during domestication f...

Additional file 2: Table S1. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Abstract

Extracted data

Additional file 2: Table S1. of B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.)

Abstract

Extracted data

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