Additional file 5: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Data for: Phylogeny and divergence times of suckers (Cypriniformes: Catostomidae) inferred from Bayesian total-evidence analyses of molecules, morphology, and fossils

Bagley, J (via Mendeley Data)

June 2018

In support of the manuscript by Bagley, Mayden, & Harris (2018), this accession provides the raw dat...

Additional file 3: Table S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Divergence time estimates in millions of years (rounded to nearest 0.1 Ma) as estimated by *BEAST fo...

Additional file 6: of Phylogeography of freshwater planorbid snails reveals diversification patterns in Eurasian continental islands

Takumi Saito (779711)
Takahiro Hirano (150044)
Larisa Prozorova (5939927)
Van Tu Do (5939930)
Anna Sulikowska-Drozd (5939933)
Tatiana Sitnikova (5939936)
Purevdorj Surenkhorloo (5939939)
Daishi Yamazaki (5939942)
Yuta Morii (5939945)
Yuichi Kameda (740396)
Hiroshi Fukuda (159522)
Satoshi Chiba (275187)

November 2018

Detailed information of divergence time estimation, ancestral state reconstruction, and lineage dive...

Additional file 7: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Histograms showing the distribution of selected nodes from BEAST analyses 1 and 2. (PNG 327 kb

Additional file 8: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Mitochondrial genome structure with genome size, gene annotations, GC-content in blue and AT-content...

Additional file 3: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

XML BEAST file including data matrix and parameter setup as described in Materials and Methods. (XML...

Additional file 9: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Time calibrated phylogeny of BEAST analysis 1 plotted on stratigraphic chart. New sequenced species ...

Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster
Sergio Vargas
Ingrid S. Knapp
Shirley A. Pomponi
Robert J. Toonen
Dirk Erpenbeck
Gert Wörheide

July 2018

Abstract Background Approximately 80% of all described extant sponge species belong to the class Dem...

Additional file 1: of Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae)

Sean Burke (265361)
Mark Ungerer (3321588)
Melvin Duvall (3447194)

August 2018

Table S1 Information of fossils calibrations used for divergence date analysis [49, 68â73]. (DOCX ...

Additional file 1: of Ecological divergence and conservatism: spatiotemporal patterns of niche evolution in a genus of livebearing fishes (Poeciliidae: Xiphophorus)

Zachary Culumber (3453404)
Michael Tobler (357088)

February 2016

Time-calibrated phylogeny adapted from Jones et al. [43] with divergence times given for each node. ...

Additional file 2: of A phylogenomic framework and timescale for comparative studies of tunicates

Frédéric Delsuc (70930)
Hervé Philippe (21475)
Georgia Tsagkogeorga (3261111)
Paul Simion (3309834)
Marie-Ka Tilak (87507)
Xavier Turon (134812)
Susanna López-Legentil (204057)
Jacques Piette (56234)
Patrick Lemaire (17813)
Emmanuel Douzery (264000)

April 2018

Figure S1. Bayesian chronogram obtained using an uncorrelated gamma (UGAM) relaxed molecular clock m...

Additional file 5: of Genomic divergence and cohesion in a species of pelagic freshwater bacteria

Matthias Hoetzinger (2152498)
Martin Hahn (4516144)

October 2017

Inferred numbers of events between branches of the genealogy. The number of events as inferred from ...

Additional file 4: of Out-of-the tropics or trans-tropical dispersal? The origins of the disjunct distribution of the gooseneck barnacle Pollicipes elegans

Sergio Marchant (3580586)
Amy Moran (466088)
Peter Marko (3263685)

December 2015

Divergence time posterior plots. Joint posterior density plots of divergence time between population...

Additional file 4: of Paleozoic diversification of terrestrial chitin-degrading bacterial lineages

Danielle Gruen (6271358)
Joanna Wolfe (5050637)
Gregory Fournier (6271364)

January 2019

Table S2. Extended Table 2 of all results and parameters tested. Prior and posterior divergence time...

Additional file 1: of Fossils matter: improved estimates of divergence times in Pinus reveal older diversification

Bianca Saladin (3904714)
Andrew Leslie (3253107)
Rafael WĂźest (3904717)
Glenn Litsios (3248730)
Elena Conti (628642)
Nicolas Salamin (2923683)
Niklaus Zimmermann (3904711)

April 2017

Additional maximum clade credibility (MCC) trees. The trees originate from the node dating (ND) meth...

Data for: Phylogeny and divergence times of suckers (Cypriniformes: Catostomidae) inferred from Bayesian total-evidence analyses of molecules, morphology, and fossils

Bagley, J (via Mendeley Data)

June 2018

In support of the manuscript by Bagley, Mayden, & Harris (2018), this accession provides the raw dat...

Additional file 3: Table S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Divergence time estimates in millions of years (rounded to nearest 0.1 Ma) as estimated by *BEAST fo...

Additional file 6: of Phylogeography of freshwater planorbid snails reveals diversification patterns in Eurasian continental islands

Takumi Saito (779711)
Takahiro Hirano (150044)
Larisa Prozorova (5939927)
Van Tu Do (5939930)
Anna Sulikowska-Drozd (5939933)
Tatiana Sitnikova (5939936)
Purevdorj Surenkhorloo (5939939)
Daishi Yamazaki (5939942)
Yuta Morii (5939945)
Yuichi Kameda (740396)
Hiroshi Fukuda (159522)
Satoshi Chiba (275187)

November 2018

Detailed information of divergence time estimation, ancestral state reconstruction, and lineage dive...

Additional file 7: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Histograms showing the distribution of selected nodes from BEAST analyses 1 and 2. (PNG 327 kb

Additional file 8: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Mitochondrial genome structure with genome size, gene annotations, GC-content in blue and AT-content...

Additional file 3: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

XML BEAST file including data matrix and parameter setup as described in Materials and Methods. (XML...

Additional file 9: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Time calibrated phylogeny of BEAST analysis 1 plotted on stratigraphic chart. New sequenced species ...

Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster
Sergio Vargas
Ingrid S. Knapp
Shirley A. Pomponi
Robert J. Toonen
Dirk Erpenbeck
Gert Wörheide

July 2018

Abstract Background Approximately 80% of all described extant sponge species belong to the class Dem...

Additional file 1: of Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae)

Sean Burke (265361)
Mark Ungerer (3321588)
Melvin Duvall (3447194)

August 2018

Table S1 Information of fossils calibrations used for divergence date analysis [49, 68â73]. (DOCX ...

Additional file 1: of Ecological divergence and conservatism: spatiotemporal patterns of niche evolution in a genus of livebearing fishes (Poeciliidae: Xiphophorus)

Zachary Culumber (3453404)
Michael Tobler (357088)

February 2016

Time-calibrated phylogeny adapted from Jones et al. [43] with divergence times given for each node. ...

Additional file 2: of A phylogenomic framework and timescale for comparative studies of tunicates

Frédéric Delsuc (70930)
Hervé Philippe (21475)
Georgia Tsagkogeorga (3261111)
Paul Simion (3309834)
Marie-Ka Tilak (87507)
Xavier Turon (134812)
Susanna López-Legentil (204057)
Jacques Piette (56234)
Patrick Lemaire (17813)
Emmanuel Douzery (264000)

April 2018

Figure S1. Bayesian chronogram obtained using an uncorrelated gamma (UGAM) relaxed molecular clock m...

Additional file 5: of Genomic divergence and cohesion in a species of pelagic freshwater bacteria

Matthias Hoetzinger (2152498)
Martin Hahn (4516144)

October 2017

Inferred numbers of events between branches of the genealogy. The number of events as inferred from ...

Additional file 4: of Out-of-the tropics or trans-tropical dispersal? The origins of the disjunct distribution of the gooseneck barnacle Pollicipes elegans

Sergio Marchant (3580586)
Amy Moran (466088)
Peter Marko (3263685)

December 2015

Divergence time posterior plots. Joint posterior density plots of divergence time between population...

Additional file 4: of Paleozoic diversification of terrestrial chitin-degrading bacterial lineages

Danielle Gruen (6271358)
Joanna Wolfe (5050637)
Gregory Fournier (6271364)

January 2019

Table S2. Extended Table 2 of all results and parameters tested. Prior and posterior divergence time...

Additional file 1: of Fossils matter: improved estimates of divergence times in Pinus reveal older diversification

Bianca Saladin (3904714)
Andrew Leslie (3253107)
Rafael WĂźest (3904717)
Glenn Litsios (3248730)
Elena Conti (628642)
Nicolas Salamin (2923683)
Niklaus Zimmermann (3904711)

April 2017

Additional maximum clade credibility (MCC) trees. The trees originate from the node dating (ND) meth...

Data for: Phylogeny and divergence times of suckers (Cypriniformes: Catostomidae) inferred from Bayesian total-evidence analyses of molecules, morphology, and fossils

Bagley, J (via Mendeley Data)

June 2018

In support of the manuscript by Bagley, Mayden, & Harris (2018), this accession provides the raw dat...

Additional file 3: Table S2. of An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris)

Sean Reilly (2284096)
Ammon Corl (149541)
David Wake (3577070)

November 2015

Divergence time estimates in millions of years (rounded to nearest 0.1 Ma) as estimated by *BEAST fo...

Additional file 6: of Phylogeography of freshwater planorbid snails reveals diversification patterns in Eurasian continental islands

Takumi Saito (779711)
Takahiro Hirano (150044)
Larisa Prozorova (5939927)
Van Tu Do (5939930)
Anna Sulikowska-Drozd (5939933)
Tatiana Sitnikova (5939936)
Purevdorj Surenkhorloo (5939939)
Daishi Yamazaki (5939942)
Yuta Morii (5939945)
Yuichi Kameda (740396)
Hiroshi Fukuda (159522)
Satoshi Chiba (275187)

November 2018

Detailed information of divergence time estimation, ancestral state reconstruction, and lineage dive...

Additional file 5: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Abstract

Extracted data

Additional file 5: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Abstract

Extracted data

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