Inferred numbers of events between branches of the genealogy. The number of events as inferred from the second ClonalOrigin run and used in Fig. 5 are given. Observed numbers, expected numbers and their ratios are given in the first, second and third sheet, respectively. (XLSX 20 kb
Sequencing and assembly information for new genomes. This file contains all genome sequencing, quali...
Figure S3. Pan genome tree. The tree was created based on the presence or absence of gene clusters i...
Figure S5. Heatmap presentation of pairwise average nucleotide identity of the 19 Vibrio species wit...
Growth curves of the two transplantation experiments performed with four P. asymbioticus strains fro...
Core alignment blocks. The 111 blocks obtained from the alignment of the nine P. asymbioticus genome...
Ka/Ks values for the alignment of the 1820 core genes for all P. asymbioticus genome pairs. (XLSX 16...
Table S3. Percentage of repetitive elements in 3â UTRs, 5â UTRs, coding regions and in the whole...
Figure S3. Association between bacterial lifestyle and effective population size, as computed from s...
Figure S5. Comparison of recombination detection methods. Recombination rates were estimated based o...
Figure S6. Impact of recombination on estimates of effective population size. Relationship between r...
Estimates of evolutionary divergence between selected Rex3 partial sequences (Neighbour-Joining meth...
Figure S8. Correlation between genome size and Ne for each lifestyle category. Genome size for a giv...
HT count according to genome size in studied bacteria. The trend curve (linear), its function (y) an...
Figure S4. Neighbor-joining phylogenetic tree of the 20 vibrios genomes based on 16S rRNA gene. The ...
Figure S1. The number of new genes added to the pangenome upon addition of new strains. (a) Burkhold...
Sequencing and assembly information for new genomes. This file contains all genome sequencing, quali...
Figure S3. Pan genome tree. The tree was created based on the presence or absence of gene clusters i...
Figure S5. Heatmap presentation of pairwise average nucleotide identity of the 19 Vibrio species wit...
Growth curves of the two transplantation experiments performed with four P. asymbioticus strains fro...
Core alignment blocks. The 111 blocks obtained from the alignment of the nine P. asymbioticus genome...
Ka/Ks values for the alignment of the 1820 core genes for all P. asymbioticus genome pairs. (XLSX 16...
Table S3. Percentage of repetitive elements in 3â UTRs, 5â UTRs, coding regions and in the whole...
Figure S3. Association between bacterial lifestyle and effective population size, as computed from s...
Figure S5. Comparison of recombination detection methods. Recombination rates were estimated based o...
Figure S6. Impact of recombination on estimates of effective population size. Relationship between r...
Estimates of evolutionary divergence between selected Rex3 partial sequences (Neighbour-Joining meth...
Figure S8. Correlation between genome size and Ne for each lifestyle category. Genome size for a giv...
HT count according to genome size in studied bacteria. The trend curve (linear), its function (y) an...
Figure S4. Neighbor-joining phylogenetic tree of the 20 vibrios genomes based on 16S rRNA gene. The ...
Figure S1. The number of new genes added to the pangenome upon addition of new strains. (a) Burkhold...
Sequencing and assembly information for new genomes. This file contains all genome sequencing, quali...
Figure S3. Pan genome tree. The tree was created based on the presence or absence of gene clusters i...
Figure S5. Heatmap presentation of pairwise average nucleotide identity of the 19 Vibrio species wit...
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