Additional file 8: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Additional file 1: of Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication

Han Gan (3695647)
Frederic Grandjean (6665333)
Tom Jenkins (699099)
Christopher Austin (2336749)

May 2019

Figure S1. Long-read only assembly enables the complete assembly of H. gammarus mitogenome. (A) Band...

Additional file 8: of Evolution of mitochondrial genomes in Baikalian amphipods

Elena Romanova (3433067)
Vladimir Aleoshin (3606530)
Ravil Kamaltynov (3606548)
Kirill Mikhailov (3606539)
Maria Logacheva (3349082)
Elena Sirotinina (3606536)
Alexander Gornov (3606533)
Anton Anikin (3606545)
Dmitry Sherbakov (3606542)

December 2016

Alignment of the putative CR sequence of Garjajewia cabanisii mitochondrial genome with its incomple...

Additional file 1: of Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life

Pedro Romero (7146)
Alexander Weigand (3430718)
Markus Pfenninger (76671)

August 2016

Evolutionary rates for nucleotides (NT; blue line) and amino acids (AA; red line) in the euthyneuran...

Additional file 7: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Histograms showing the distribution of selected nodes from BEAST analyses 1 and 2. (PNG 327 kb

Additional file 5: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Tracer statistics of turnover, diversification and sampling proportion of the two runs and the prior...

Additional file 3: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

XML BEAST file including data matrix and parameter setup as described in Materials and Methods. (XML...

Additional file 9: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Time calibrated phylogeny of BEAST analysis 1 plotted on stratigraphic chart. New sequenced species ...

Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Schuster, Astrid
Vargas, Sergio
Knapp, Ingrid S.
Pomponi, Shirley A.
Toonen, Robert J.
Erpenbeck, Dirk
Wörheide, Gert

January 2018

Background: Approximately 80% of all described extant sponge species belong to the class Demospongia...

Additional file 1: of Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae)

Sean Burke (265361)
Mark Ungerer (3321588)
Melvin Duvall (3447194)

August 2018

Table S1 Information of fossils calibrations used for divergence date analysis [49, 68â73]. (DOCX ...

Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae.

Xiujuan Wang
Dennis V Lavrov

Two major transitions in animal evolution--the origins of multicellularity and bilaterality--correla...

Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology

Plese, Bruna
Kenny, Nathan J.
Rossi, Maria Eleonora
Cárdenas, Paco
Schuster, Astrid
Taboada, Sergi
Koutsuoveli, Vasiliki
Riesgo, Ana

November 2020

The sponge class Demospongiae is the most speciose and morphologically diverse in the phylum Porifer...

Additional file 6: Table S3. of Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes

Zhiwen Chen (438082)
Hushuai Nie (4589629)
Yumei Wang (128815)
Haili Pei (4589632)
Shuangshuang Li (441516)
Lida Zhang (14681)
Jinping Hua (146024)

November 2017

Nucleotide distances and divergence time (MYA) between mitochondrial sequences and corresponding num...

Additional file 1: of Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies

Dong Zhang (73558)
Hong Zou (112099)
Shan Wu (67551)
Ming Li (91180)
Ivan JakovliÄ (4569292)
Jin Zhang (53297)
Rong Chen (29176)
Wen Li (143214)
Gui Wang (771836)

September 2018

Visual representation of the circular mitochondrial genomes of Paradiplozoon opsariichthydis, Sindip...

Additional file 1: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Stauridium tetras strain ACOI84, GenBank KR026341. Drawn by...

Additional file 1: Figure S1. of Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes

Mingyong Tang (3481736)
Zhiwen Chen (438082)
Corrinne Grover (3481733)
Yumei Wang (128815)
Shuangshuang Li (441516)
Guozheng Liu (441515)
Zhiying Ma (434380)
Jonathan Wendel (3481739)
Jinping Hua (146024)

October 2015

The distributions of plastid, mitochondrion and nuclei in sucrose-density gradient. (JPEG 325Â kb

Additional file 1: of Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication

Han Gan (3695647)
Frederic Grandjean (6665333)
Tom Jenkins (699099)
Christopher Austin (2336749)

May 2019

Figure S1. Long-read only assembly enables the complete assembly of H. gammarus mitogenome. (A) Band...

Additional file 8: of Evolution of mitochondrial genomes in Baikalian amphipods

Elena Romanova (3433067)
Vladimir Aleoshin (3606530)
Ravil Kamaltynov (3606548)
Kirill Mikhailov (3606539)
Maria Logacheva (3349082)
Elena Sirotinina (3606536)
Alexander Gornov (3606533)
Anton Anikin (3606545)
Dmitry Sherbakov (3606542)

December 2016

Alignment of the putative CR sequence of Garjajewia cabanisii mitochondrial genome with its incomple...

Additional file 1: of Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life

Pedro Romero (7146)
Alexander Weigand (3430718)
Markus Pfenninger (76671)

August 2016

Evolutionary rates for nucleotides (NT; blue line) and amino acids (AA; red line) in the euthyneuran...

Additional file 7: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Histograms showing the distribution of selected nodes from BEAST analyses 1 and 2. (PNG 327 kb

Additional file 5: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Tracer statistics of turnover, diversification and sampling proportion of the two runs and the prior...

Additional file 3: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

XML BEAST file including data matrix and parameter setup as described in Materials and Methods. (XML...

Additional file 9: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Astrid Schuster (154244)
Sergio Vargas (154238)
Ingrid Knapp (5198381)
Shirley Pomponi (276003)
Robert Toonen (4962088)
Dirk Erpenbeck (90081)
Gert Wรถrheide (3848743)

July 2018

Time calibrated phylogeny of BEAST analysis 1 plotted on stratigraphic chart. New sequenced species ...

Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Schuster, Astrid
Vargas, Sergio
Knapp, Ingrid S.
Pomponi, Shirley A.
Toonen, Robert J.
Erpenbeck, Dirk
Wörheide, Gert

January 2018

Background: Approximately 80% of all described extant sponge species belong to the class Demospongia...

Additional file 1: of Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae)

Sean Burke (265361)
Mark Ungerer (3321588)
Melvin Duvall (3447194)

August 2018

Table S1 Information of fossils calibrations used for divergence date analysis [49, 68â73]. (DOCX ...

Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae.

Xiujuan Wang
Dennis V Lavrov

Two major transitions in animal evolution--the origins of multicellularity and bilaterality--correla...

Mitochondrial evolution in the Demospongiae (Porifera): Phylogeny, divergence time, and genome biology

Plese, Bruna
Kenny, Nathan J.
Rossi, Maria Eleonora
Cárdenas, Paco
Schuster, Astrid
Taboada, Sergi
Koutsuoveli, Vasiliki
Riesgo, Ana

November 2020

The sponge class Demospongiae is the most speciose and morphologically diverse in the phylum Porifer...

Additional file 6: Table S3. of Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes

Zhiwen Chen (438082)
Hushuai Nie (4589629)
Yumei Wang (128815)
Haili Pei (4589632)
Shuangshuang Li (441516)
Lida Zhang (14681)
Jinping Hua (146024)

November 2017

Nucleotide distances and divergence time (MYA) between mitochondrial sequences and corresponding num...

Additional file 1: of Three new Diplozoidae mitogenomes expose unusual compositional biases within the Monogenea class: implications for phylogenetic studies

Dong Zhang (73558)
Hong Zou (112099)
Shan Wu (67551)
Ming Li (91180)
Ivan JakovliÄ (4569292)
Jin Zhang (53297)
Rong Chen (29176)
Wen Li (143214)
Gui Wang (771836)

September 2018

Visual representation of the circular mitochondrial genomes of Paradiplozoon opsariichthydis, Sindip...

Additional file 1: of Phylogenetic patterns of gene rearrangements in four mitochondrial genomes from the green algal family Hydrodictyaceae (Sphaeropleales, Chlorophyceae)

Audrey Farwagi (3495026)
Karolina Fučíková (3285138)
Hilary McManus (3495023)

October 2015

Circular map of mitochondrial genome for Stauridium tetras strain ACOI84, GenBank KR026341. Drawn by...

Additional file 1: Figure S1. of Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes

Mingyong Tang (3481736)
Zhiwen Chen (438082)
Corrinne Grover (3481733)
Yumei Wang (128815)
Shuangshuang Li (441516)
Guozheng Liu (441515)
Zhiying Ma (434380)
Jonathan Wendel (3481739)
Jinping Hua (146024)

October 2015

The distributions of plastid, mitochondrion and nuclei in sucrose-density gradient. (JPEG 325Â kb

Additional file 1: of Absence of evidence is not evidence of absence: Nanopore sequencing and complete assembly of the European lobster (Homarus gammarus) mitogenome uncovers the missing nad2 and a new major gene cluster duplication

Han Gan (3695647)
Frederic Grandjean (6665333)
Tom Jenkins (699099)
Christopher Austin (2336749)

May 2019

Figure S1. Long-read only assembly enables the complete assembly of H. gammarus mitogenome. (A) Band...

Additional file 8: of Evolution of mitochondrial genomes in Baikalian amphipods

Elena Romanova (3433067)
Vladimir Aleoshin (3606530)
Ravil Kamaltynov (3606548)
Kirill Mikhailov (3606539)
Maria Logacheva (3349082)
Elena Sirotinina (3606536)
Alexander Gornov (3606533)
Anton Anikin (3606545)
Dmitry Sherbakov (3606542)

December 2016

Alignment of the putative CR sequence of Garjajewia cabanisii mitochondrial genome with its incomple...

Additional file 1: of Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life

Pedro Romero (7146)
Alexander Weigand (3430718)
Markus Pfenninger (76671)

August 2016

Evolutionary rates for nucleotides (NT; blue line) and amino acids (AA; red line) in the euthyneuran...

Additional file 8: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Abstract

Extracted data

Additional file 8: of Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

Abstract

Extracted data

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