<p>(A) Distribution of Ctx resistance levels (IC99.99) of 48 beneficial mutants. (B) Likelihood analysis of the estimated shape parameter (<i>κ</i><sub>e</sub>). <i>κ</i><sub>e</sub> is plotted against the number of beneficial mutants (ranked by their effect) that were included for the estimation (<i>n</i>) by using a fitness threshold (<i>w</i><sub>c</sub>). Because each value of <i>n</i> corresponds to a range of values for <i>w</i><sub>c</sub>, there is also a range of <i>κ</i><sub>e</sub> associated with every <i>n</i>. The dashed line corresponds to <i>κ</i> = 0. <i>κ</i><sub>e</sub> is well above zero in the whole depicted range, suggesting that the distribution belongs to the Fréchet domain. (<b>C</b>) The <i>P</i>-value correspondin...
a<p>Assessed at 36 hours.</p>b<p>95% Confidence intervals determined by a <i>t</i>-distribution with...
International audienceWe evaluate the performance of maximum likelihood (ML) analysis of allele freq...
<p>Estimated resistance factors (on a logarithmic scale, log RF, column 2) and fitness costs (column...
<p>(A) Distribution of the selection coefficients (<i>s</i>) of the 48 beneficial mutations for four...
<p>(a) Heatmap for the probability of initiation for a single crypt for ranges of parameters of <i>α...
Characterizing the distribution of fitness effects (DFE) for new mutations is central in evolutionar...
<p>(<b>A</b>) Waterfall distribution of colony sizes, according to median values (standard method). ...
<p>This figure is a schematic showing how the distribution of fitness effects of beneficial mutation...
<p>(A) Plot of fitness HIV-1 for library CA-mutants, overlayed with the Shannon entropy values for e...
<p><b>a</b>. The distributions of fitness effects of all mutations observed in the sequenced rounds ...
<p>Parameters for the gamma distribution of fitness effects for transition mutations in <i>pol</i> i...
a<p>±1 SE of the estimated value.</p>b<p>The set of pdf models fitted and compared was: Exponential,...
<p>(A) Correlation between true <i>r</i><sub><i>i</i></sub> (x-axis) and estimated (y-axis) (all va...
(a) Probability Phard,s(2) of observing a single allele in a pair drawn from a subrange of size Ls f...
International audienceThe distribution of fitness effects (DFE) encompasses the fraction of deleteri...
a<p>Assessed at 36 hours.</p>b<p>95% Confidence intervals determined by a <i>t</i>-distribution with...
International audienceWe evaluate the performance of maximum likelihood (ML) analysis of allele freq...
<p>Estimated resistance factors (on a logarithmic scale, log RF, column 2) and fitness costs (column...
<p>(A) Distribution of the selection coefficients (<i>s</i>) of the 48 beneficial mutations for four...
<p>(a) Heatmap for the probability of initiation for a single crypt for ranges of parameters of <i>α...
Characterizing the distribution of fitness effects (DFE) for new mutations is central in evolutionar...
<p>(<b>A</b>) Waterfall distribution of colony sizes, according to median values (standard method). ...
<p>This figure is a schematic showing how the distribution of fitness effects of beneficial mutation...
<p>(A) Plot of fitness HIV-1 for library CA-mutants, overlayed with the Shannon entropy values for e...
<p><b>a</b>. The distributions of fitness effects of all mutations observed in the sequenced rounds ...
<p>Parameters for the gamma distribution of fitness effects for transition mutations in <i>pol</i> i...
a<p>±1 SE of the estimated value.</p>b<p>The set of pdf models fitted and compared was: Exponential,...
<p>(A) Correlation between true <i>r</i><sub><i>i</i></sub> (x-axis) and estimated (y-axis) (all va...
(a) Probability Phard,s(2) of observing a single allele in a pair drawn from a subrange of size Ls f...
International audienceThe distribution of fitness effects (DFE) encompasses the fraction of deleteri...
a<p>Assessed at 36 hours.</p>b<p>95% Confidence intervals determined by a <i>t</i>-distribution with...
International audienceWe evaluate the performance of maximum likelihood (ML) analysis of allele freq...
<p>Estimated resistance factors (on a logarithmic scale, log RF, column 2) and fitness costs (column...