<p>Additionally, loci in common with the Pearson correlation method are shown in parentheses.</p>*<p>(−) indicates a negative methylation-expression correlation, where high methylation correlates to lower expression or vice versa. (+) indicates a positive correlation where high methylation correlates to increased expression or vice versa.</p>†<p>P values were obtained after 10,000 random permutations of each class label.</p>‡<p>Gene was selected for further validation.</p>§<p>The methylation level of the probe FRZB_P406_F has a positive correlation with gene expression by both Pearson correlation and the discretization method, while the other probe FRZB_E186_R has a negative methylation-expression correlation by both methods. Only the FRZB_...
<p>(A) Pairwise plots of CG (left), CHG (middle), and CHH (right) methylation levels (Y-axis, D homo...
<p>(A) List of genes potentially associated with aberrant methylation patterns in DLBCL. Boxplots vi...
A: Analysis in the HbSS group. i PTGFR; ii GPR56; iii GALR2 and iv ADCY4. B: Analysis in the HbSC gr...
<p>(A) Pearson correlation was used to measure linear relationships between DNA methylation and gene...
<p>The Venn Diagram displays the total number of overlapping loci with positive/negative methylation...
<p>Correlation is shown with violin plots as distribution of Pearson’s <i>r</i> along genes. a) Gene...
<p>Scatter plots depict the extent of linear correlation of DNA methylation (x axis) to gene express...
<p>The matched CpGs are sorted by their genomic context and then based upon the direction with which...
*<p>Average correlation is shown for loci with more than one gene expression probe.</p
<p>The differentially methylated CpGs that matched to differentially expressed genes are sorted abov...
<p>Expression was taken as the response variable, with one of mean -score, mean derivative and methy...
<p><b>Genes were grouped into 50 bins, in order of increasing gene expression. DNA methylation of th...
<p><b>A)</b> QQ plot of –log10 p-values for testing the null of no association between eQTL SNPs and...
<p>A correlation analysis was performed on change in methylation and change in gene expression betwe...
3a)– 3c) show the significant inverse correlation between gene expression for one probe on BCAT1 (22...
<p>(A) Pairwise plots of CG (left), CHG (middle), and CHH (right) methylation levels (Y-axis, D homo...
<p>(A) List of genes potentially associated with aberrant methylation patterns in DLBCL. Boxplots vi...
A: Analysis in the HbSS group. i PTGFR; ii GPR56; iii GALR2 and iv ADCY4. B: Analysis in the HbSC gr...
<p>(A) Pearson correlation was used to measure linear relationships between DNA methylation and gene...
<p>The Venn Diagram displays the total number of overlapping loci with positive/negative methylation...
<p>Correlation is shown with violin plots as distribution of Pearson’s <i>r</i> along genes. a) Gene...
<p>Scatter plots depict the extent of linear correlation of DNA methylation (x axis) to gene express...
<p>The matched CpGs are sorted by their genomic context and then based upon the direction with which...
*<p>Average correlation is shown for loci with more than one gene expression probe.</p
<p>The differentially methylated CpGs that matched to differentially expressed genes are sorted abov...
<p>Expression was taken as the response variable, with one of mean -score, mean derivative and methy...
<p><b>Genes were grouped into 50 bins, in order of increasing gene expression. DNA methylation of th...
<p><b>A)</b> QQ plot of –log10 p-values for testing the null of no association between eQTL SNPs and...
<p>A correlation analysis was performed on change in methylation and change in gene expression betwe...
3a)– 3c) show the significant inverse correlation between gene expression for one probe on BCAT1 (22...
<p>(A) Pairwise plots of CG (left), CHG (middle), and CHH (right) methylation levels (Y-axis, D homo...
<p>(A) List of genes potentially associated with aberrant methylation patterns in DLBCL. Boxplots vi...
A: Analysis in the HbSS group. i PTGFR; ii GPR56; iii GALR2 and iv ADCY4. B: Analysis in the HbSC gr...