<p>The pattern produced by our model correlates with literature. <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002899#pcbi.1002899-Johnson1" target="_blank">[6]</a>, <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002899#pcbi.1002899-ShaferRobert1" target="_blank">[18]</a> In particular the specific profiles of V106I, Y181C and G190A are reproduced well. Values in the cells represent Log FC.</p
<p>Patterns of predicted relative NRTI susceptibility profiles for 35,377 viruses in HIVDB with 4,74...
<p>250 samples from 234 drug-naive patients and 115 samples from 78 treated A/AE patients were genot...
<p>Panels <b>A</b> and <b>B</b> have same representation as in <a href="http://www.ploscompbiol.org/...
<p>The value in the different drug columns indicates the average Log FC in the presence of this muta...
<p>Shown are the 30 mutations that have the most diverse effect over the different members of the PI...
<p>The value in the different drug columns indicates the average Log FC in the presence of this muta...
<p>Blue = HIV-1 subtype B backbone; Green = HIV-1 subtype C backbone; “+” = mutation 184V is present...
<p>Patterns of predicted relative NNRTI susceptibility profiles for 31,484 viruses in HIVDB with 2,3...
<p>(A) Network views of Type-II <i>VSs</i> along with their pathway annotations in SKBR3 and BT474 c...
<p>Venn diagrams represent (A) the number of mutations, (B) nsSNPs, or (C) genes that were observed ...
ObjectivesThe introduction of two new non-nucleoside reverse transcriptase inhibitors (NNRTIs) in th...
<p>In vitro susceptibilities associated with the 9 NNRTI drug resistance mutation patterns.</p
<p>PRCCs are shown between model parameters (mutation frequency, number of resistance mutations, rel...
<p>A) Boxplots show the distribution of GC content of APOBEC-resistant (left) and APOBEC-vulnerable ...
<p>NNRTI: non nucleoside reverse transcriptase inhibitors, NRTI: nucleoside reverse transcriptase in...
<p>Patterns of predicted relative NRTI susceptibility profiles for 35,377 viruses in HIVDB with 4,74...
<p>250 samples from 234 drug-naive patients and 115 samples from 78 treated A/AE patients were genot...
<p>Panels <b>A</b> and <b>B</b> have same representation as in <a href="http://www.ploscompbiol.org/...
<p>The value in the different drug columns indicates the average Log FC in the presence of this muta...
<p>Shown are the 30 mutations that have the most diverse effect over the different members of the PI...
<p>The value in the different drug columns indicates the average Log FC in the presence of this muta...
<p>Blue = HIV-1 subtype B backbone; Green = HIV-1 subtype C backbone; “+” = mutation 184V is present...
<p>Patterns of predicted relative NNRTI susceptibility profiles for 31,484 viruses in HIVDB with 2,3...
<p>(A) Network views of Type-II <i>VSs</i> along with their pathway annotations in SKBR3 and BT474 c...
<p>Venn diagrams represent (A) the number of mutations, (B) nsSNPs, or (C) genes that were observed ...
ObjectivesThe introduction of two new non-nucleoside reverse transcriptase inhibitors (NNRTIs) in th...
<p>In vitro susceptibilities associated with the 9 NNRTI drug resistance mutation patterns.</p
<p>PRCCs are shown between model parameters (mutation frequency, number of resistance mutations, rel...
<p>A) Boxplots show the distribution of GC content of APOBEC-resistant (left) and APOBEC-vulnerable ...
<p>NNRTI: non nucleoside reverse transcriptase inhibitors, NRTI: nucleoside reverse transcriptase in...
<p>Patterns of predicted relative NRTI susceptibility profiles for 35,377 viruses in HIVDB with 4,74...
<p>250 samples from 234 drug-naive patients and 115 samples from 78 treated A/AE patients were genot...
<p>Panels <b>A</b> and <b>B</b> have same representation as in <a href="http://www.ploscompbiol.org/...