a<p>See <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0062307#pone-0062307-g001" target="_blank">Figure 1B</a> for branch labels.</p>b<p>np, number of parameters.</p>c<p>Positively selected sites detected by branch-site model A test are referred to <i>Megaderma lyra</i> in branch D and to <i>Rousettus leschenaultii</i> in branch F, respectively. Sites with Posterior probability values >0.95 are highlighted with underline. Site positions were referred to the <i>Myo6</i> amino acid sequence alignment of all species (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0062307#pone.0062307.s002" target="_blank">Figure S2</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.00623...
a<p>M1a (nearly neutral), M2a (positive selection), M8a (beta & <i>ω = </i>1) and M8 (beta & <i>ω</i...
<p>Distribution of the number of positively selected amino acid sites after correction of p-values w...
A RP alignment of 11,730 positions (after GBlock filtration; see Additional data file 4) was analyze...
<p>Foreground (<i>Cuscuta nitida</i> or <i>Epifagus virginiana</i> lineages) and background omega (ω...
<p><sup>a</sup>np, number of parameters.</p><p><sup>b</sup>LRT, likelihood ratio test.</p><p><sup>c<...
The branch-site test is a likelihood ratio test to detect positive selection along prespecified line...
1<p>according to BEB calculations</p>2<p>numbers into brackets correspond to the positions indicated...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection with 1 degree of freedom; Foregro...
<p>Parameter estimates for branch-site tests (H<sub>0</sub>: <sub>2</sub> = 1; H<sub>A</sub>: <sub>2...
The branch-site test of positive selection is a standard approach to detect past episodic positive s...
A) Amino acid sequence alignment of DBD of MlERRs. B) Bayesian phylogenetic tree of MlERRs, the BPPs...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
<p>Positively selected sites were determined by MEME analysis; trees are available in <a href="http:...
<p>Note: np number of parameters, ln<i>L</i> ln[likelihood] value, 2Δ(ln<i>L</i>) twice the differen...
<p>Positively selected sites under branch-site model for foreground lineages Prob(w>1).</p
a<p>M1a (nearly neutral), M2a (positive selection), M8a (beta & <i>ω = </i>1) and M8 (beta & <i>ω</i...
<p>Distribution of the number of positively selected amino acid sites after correction of p-values w...
A RP alignment of 11,730 positions (after GBlock filtration; see Additional data file 4) was analyze...
<p>Foreground (<i>Cuscuta nitida</i> or <i>Epifagus virginiana</i> lineages) and background omega (ω...
<p><sup>a</sup>np, number of parameters.</p><p><sup>b</sup>LRT, likelihood ratio test.</p><p><sup>c<...
The branch-site test is a likelihood ratio test to detect positive selection along prespecified line...
1<p>according to BEB calculations</p>2<p>numbers into brackets correspond to the positions indicated...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection with 1 degree of freedom; Foregro...
<p>Parameter estimates for branch-site tests (H<sub>0</sub>: <sub>2</sub> = 1; H<sub>A</sub>: <sub>2...
The branch-site test of positive selection is a standard approach to detect past episodic positive s...
A) Amino acid sequence alignment of DBD of MlERRs. B) Bayesian phylogenetic tree of MlERRs, the BPPs...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
<p>Positively selected sites were determined by MEME analysis; trees are available in <a href="http:...
<p>Note: np number of parameters, ln<i>L</i> ln[likelihood] value, 2Δ(ln<i>L</i>) twice the differen...
<p>Positively selected sites under branch-site model for foreground lineages Prob(w>1).</p
a<p>M1a (nearly neutral), M2a (positive selection), M8a (beta & <i>ω = </i>1) and M8 (beta & <i>ω</i...
<p>Distribution of the number of positively selected amino acid sites after correction of p-values w...
A RP alignment of 11,730 positions (after GBlock filtration; see Additional data file 4) was analyze...