<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection with 1 degree of freedom; Foreground 1: <i>H. Sapiens</i> B3, <i>P. Troglodytes</i> B3 and <i>G. Gorilla</i> B3 lineages; Foreground 2: <i>H. Sapiens</i> B4, <i>P. Troglodytes</i> B4 and <i>G. Gorilla</i> B4 lineages. Amino acid sites found to be under positive selection with posterior probabilities greater than 80% (blank) are displayed; NA, not applicable because the neutral model fits better than positive selection.</p><p>** Significance with p<0.01.</p
<p>LRTs revealed none of the amino acid sites of E2 in each patient was under positive selection at ...
<p>Notes: positively selected sites with significance at the 99% level are bold, whereas the remaini...
<p><sup>a</sup>All the PAML and HyPhy analyses were run on four non-recombinant <i>PgiC1</i> segment...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; Foreground: <i>H. sapiens</i>, <...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; p: proportion of sites under pos...
a<p>Twice the difference between the log likelihood of M0 (one ratio) and two ratio model.</p>b<p><i...
The branch-site test is a likelihood ratio test to detect positive selection along prespecified line...
a<p>Model assuming a single ω value for all lineages in the phylogeny;</p>b<p>Model assuming diferen...
<p><sup>a</sup>np, number of parameters.</p><p><sup>b</sup>LRT, likelihood ratio test.</p><p><sup>c<...
<p>lnL, the log-likelihood difference between the two models; 2Δl, twice the log-likelihood differen...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
<p>BS-REL analysis for <i>CD207</i> (A) and <i>CTSG</i> (B). Branch lengths are scaled to the expect...
<p>Note: np number of parameters, ln<i>L</i> ln[likelihood] value, 2Δ(ln<i>L</i>) twice the differen...
<p>Selective pressures are divided into three classes: ω0 (dN/dS<1, negative selection), ω1 (dN/dS =...
<p>LRTs revealed none of the amino acid sites of E2 in each patient was under positive selection at ...
<p>Notes: positively selected sites with significance at the 99% level are bold, whereas the remaini...
<p><sup>a</sup>All the PAML and HyPhy analyses were run on four non-recombinant <i>PgiC1</i> segment...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; Foreground: <i>H. sapiens</i>, <...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; p: proportion of sites under pos...
a<p>Twice the difference between the log likelihood of M0 (one ratio) and two ratio model.</p>b<p><i...
The branch-site test is a likelihood ratio test to detect positive selection along prespecified line...
a<p>Model assuming a single ω value for all lineages in the phylogeny;</p>b<p>Model assuming diferen...
<p><sup>a</sup>np, number of parameters.</p><p><sup>b</sup>LRT, likelihood ratio test.</p><p><sup>c<...
<p>lnL, the log-likelihood difference between the two models; 2Δl, twice the log-likelihood differen...
<p>Note.— <i>p</i>: Number of parameters including 15 branch lengths in the tree (<a href="http://ww...
<p>BS-REL analysis for <i>CD207</i> (A) and <i>CTSG</i> (B). Branch lengths are scaled to the expect...
<p>Note: np number of parameters, ln<i>L</i> ln[likelihood] value, 2Δ(ln<i>L</i>) twice the differen...
<p>Selective pressures are divided into three classes: ω0 (dN/dS<1, negative selection), ω1 (dN/dS =...
<p>LRTs revealed none of the amino acid sites of E2 in each patient was under positive selection at ...
<p>Notes: positively selected sites with significance at the 99% level are bold, whereas the remaini...
<p><sup>a</sup>All the PAML and HyPhy analyses were run on four non-recombinant <i>PgiC1</i> segment...