<p>Selective pressures are divided into three classes: ω0 (dN/dS<1, negative selection), ω1 (dN/dS = 1, neutral evolution) and ω2 (dN/dS ≥1, positive selection). p0, p1 and p2a+p2b are their respective proportion. lnL0 and lnL1 are the likelihood values of the null (ω2 = 1) and alternative (ω2≥1) models, respectively. The likelihood ratio test [2*(lnL1-lnL0)] allows discriminating between neutral evolution and positive selection. A p-value<0.01 presents a significant test (marked as **). Sites under positive selection with BEB score >95% are shown.</p
It has been a long-standing interest in evolutionary biology to search for the traces of recent posi...
a<p>All positions containing gaps were eliminated.</p>b<p>The probability (P) of rejecting the null ...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>LRTs revealed none of the amino acid sites of E2 in each patient was under positive selection at ...
a<p>The <i>dN/dS</i> ratio of the class of codons under positive selection is given with the percent...
<p>Reject one-ratio model <i>P</i><0.001 (2δ = 289.46, df = 79); reject neutral model <i>P</i><0.001...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection with 1 degree of freedom; Foregro...
Selective pressure at the protein level is typically measured by the nonsynonymous/synonymous rate r...
<p><sup>a</sup>All the PAML and HyPhy analyses were run on four non-recombinant <i>PgiC1</i> segment...
<p>M0 and M1 are one ratio model and free-ratio model, respectively.</p><p>lnL: log likelihood score...
<p><sup>a</sup>: Likelihood ratio test was estimated by 2ΔlnL and followed by a χ<sup>2</sup> test</...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; p: proportion of sites under pos...
The branch-site test is a likelihood ratio test to detect positive selection along prespecified line...
<p>#seq, number of nucleotide sequence entries used in the multi-alignments. Length, nucleotide sequ...
<p>lnL, the log-likelihood difference between the two models; 2Δl, twice the log-likelihood differen...
It has been a long-standing interest in evolutionary biology to search for the traces of recent posi...
a<p>All positions containing gaps were eliminated.</p>b<p>The probability (P) of rejecting the null ...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...
<p>LRTs revealed none of the amino acid sites of E2 in each patient was under positive selection at ...
a<p>The <i>dN/dS</i> ratio of the class of codons under positive selection is given with the percent...
<p>Reject one-ratio model <i>P</i><0.001 (2δ = 289.46, df = 79); reject neutral model <i>P</i><0.001...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection with 1 degree of freedom; Foregro...
Selective pressure at the protein level is typically measured by the nonsynonymous/synonymous rate r...
<p><sup>a</sup>All the PAML and HyPhy analyses were run on four non-recombinant <i>PgiC1</i> segment...
<p>M0 and M1 are one ratio model and free-ratio model, respectively.</p><p>lnL: log likelihood score...
<p><sup>a</sup>: Likelihood ratio test was estimated by 2ΔlnL and followed by a χ<sup>2</sup> test</...
<p>−2Δ<i>L</i>, likelihood ratio test to detect positive selection; p: proportion of sites under pos...
The branch-site test is a likelihood ratio test to detect positive selection along prespecified line...
<p>#seq, number of nucleotide sequence entries used in the multi-alignments. Length, nucleotide sequ...
<p>lnL, the log-likelihood difference between the two models; 2Δl, twice the log-likelihood differen...
It has been a long-standing interest in evolutionary biology to search for the traces of recent posi...
a<p>All positions containing gaps were eliminated.</p>b<p>The probability (P) of rejecting the null ...
<p>Likelihood ratio tests (−2Δ<i>l</i>) comparing a null and positive selection models (M1a vs M2a, ...