Summary of QC problems for AE data, proposed solutions, and potential drawbacks. (XLSX 31Â kb
Performance of GATK ASEReadCounter (GATK) tool compared with SAMtools mpileup with output processed ...
Additional file 8: Table S13. BIOS replication for unfiltered co-eQTLs for major cell type
Additional file 9: Table S14. GO enrichment for co-eGenes associated with the same eQTL, for all eQT...
Summary of publications and tools that analyze AE data, listing their specific application, the type...
QC measures improve the power to detect biologically relevant allelic expression at genes that have ...
Allelic expression signal from a population of monoclonal versus polyclonal cells. In the latter, st...
QC measures reduce overdispersion in technical replicates when testing for allelic imbalance using a...
Quality control of genotype data for allelic expression analysis (extended). a Boxplot of per indivi...
Genomic coverage of allelic expression data in Geuvadis CEU samples (extended). a Total number of un...
Effect of overlapping and duplicate reads on AE analysis of Geuvadis samples. a Histogram of percent...
Comparison of AE data generated with different alignment strategies. a–d For each comparison the obs...
Table S2. Human RNAseq, ChIPseq and WGBS allele-specific alignment results. (TXT 6957 kb
Table S2 detailing the numbers of covered sites and ASE events within RNA sequencing data from 93 in...
Additional file 13: Table S18. Colocalization results for eQTL signal with GWAS signa
Low-level reference bias at het-SNPs remains after filtering biased sites. a Boxplot of reference ra...
Performance of GATK ASEReadCounter (GATK) tool compared with SAMtools mpileup with output processed ...
Additional file 8: Table S13. BIOS replication for unfiltered co-eQTLs for major cell type
Additional file 9: Table S14. GO enrichment for co-eGenes associated with the same eQTL, for all eQT...
Summary of publications and tools that analyze AE data, listing their specific application, the type...
QC measures improve the power to detect biologically relevant allelic expression at genes that have ...
Allelic expression signal from a population of monoclonal versus polyclonal cells. In the latter, st...
QC measures reduce overdispersion in technical replicates when testing for allelic imbalance using a...
Quality control of genotype data for allelic expression analysis (extended). a Boxplot of per indivi...
Genomic coverage of allelic expression data in Geuvadis CEU samples (extended). a Total number of un...
Effect of overlapping and duplicate reads on AE analysis of Geuvadis samples. a Histogram of percent...
Comparison of AE data generated with different alignment strategies. a–d For each comparison the obs...
Table S2. Human RNAseq, ChIPseq and WGBS allele-specific alignment results. (TXT 6957 kb
Table S2 detailing the numbers of covered sites and ASE events within RNA sequencing data from 93 in...
Additional file 13: Table S18. Colocalization results for eQTL signal with GWAS signa
Low-level reference bias at het-SNPs remains after filtering biased sites. a Boxplot of reference ra...
Performance of GATK ASEReadCounter (GATK) tool compared with SAMtools mpileup with output processed ...
Additional file 8: Table S13. BIOS replication for unfiltered co-eQTLs for major cell type
Additional file 9: Table S14. GO enrichment for co-eGenes associated with the same eQTL, for all eQT...
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