Expression profile of 6S RNA (Panel a), RNaseP_bact_a (Panel b), and Îą-tmRNA (Panel c) during R. prowazekii infection of HMECs. Y-axis denotes the nucleotide coverage. X-axis shows the genomic location of sRNAs in R. prowazekii genome (NC_020993). The sRNAs are shown by red arrows whereas green arrows indicate the flanking up and downstream genes. The numbers in the parenthesis indicate the exact genomic location. The flanking genes and sRNAs are not drawn to scale. (TIF 955 kb
Part 1. RNA secondary structures of 5'-untranslated regions of proteins with the PF00270 and PF00271...
Nucleotide biases of piRNA clusters. Nucleotide biases along the length of all sRNAs mapping to pred...
Supplementary results, figures and methods. Figure S1. Measures of cleavage site motif category sequ...
List of primers used for amplification of R. prowazekii predicted sRNAs. (XLSX 49 kb
List of target genes predicted to interact with R. prowazekii strain Brienl sRNAs. (XLSX 86 kb
List of Rickettsia species and strains used throughout this work. The list has been categorized into...
Nucleotide composition around the 5′ ends of detected small RNAs. The plots illustrate the averaged ...
Bioinformatics Pipeline. Graphical summary of the bioinformatic pipeline used to obtain putative Puc...
Figure S1. Sequencing statistics. A) Library size: Number of raw reads in the samples; Alignment: Nu...
Figure S2. Size distributions of the 5'ptRFs in total and unique aspects. Solid boxes represent thos...
List of in silico predicted sRNAs using RITs from WebGester DB. S2A: Forward strand predictions. S2B...
Presence plots indicating the distribution and abundance of (A) Aspergillus fumigatus chrysovirus (A...
Small RNA size profile throughout the development of D. virilis. Abundance and composition of small ...
Figure S1. Size distribution of sRNAs in the mock-inoculated rice samples (A) and the second replica...
Number of sRNA species mapping to different TE reference datasets. Table S2. Mapping of U_sRNA and M...
Part 1. RNA secondary structures of 5'-untranslated regions of proteins with the PF00270 and PF00271...
Nucleotide biases of piRNA clusters. Nucleotide biases along the length of all sRNAs mapping to pred...
Supplementary results, figures and methods. Figure S1. Measures of cleavage site motif category sequ...
List of primers used for amplification of R. prowazekii predicted sRNAs. (XLSX 49 kb
List of target genes predicted to interact with R. prowazekii strain Brienl sRNAs. (XLSX 86 kb
List of Rickettsia species and strains used throughout this work. The list has been categorized into...
Nucleotide composition around the 5′ ends of detected small RNAs. The plots illustrate the averaged ...
Bioinformatics Pipeline. Graphical summary of the bioinformatic pipeline used to obtain putative Puc...
Figure S1. Sequencing statistics. A) Library size: Number of raw reads in the samples; Alignment: Nu...
Figure S2. Size distributions of the 5'ptRFs in total and unique aspects. Solid boxes represent thos...
List of in silico predicted sRNAs using RITs from WebGester DB. S2A: Forward strand predictions. S2B...
Presence plots indicating the distribution and abundance of (A) Aspergillus fumigatus chrysovirus (A...
Small RNA size profile throughout the development of D. virilis. Abundance and composition of small ...
Figure S1. Size distribution of sRNAs in the mock-inoculated rice samples (A) and the second replica...
Number of sRNA species mapping to different TE reference datasets. Table S2. Mapping of U_sRNA and M...
Part 1. RNA secondary structures of 5'-untranslated regions of proteins with the PF00270 and PF00271...
Nucleotide biases of piRNA clusters. Nucleotide biases along the length of all sRNAs mapping to pred...
Supplementary results, figures and methods. Figure S1. Measures of cleavage site motif category sequ...