Additional file 2: of Bacterial small RNAs in the Genus Rickettsia

Additional file 2: of Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen

Yiqun Hu (294314)
Liyuan Zhang (220168)
Xuan Wang (55634)
Fengli Sun (5049689)
Xiangxin Kong (5863898)
Hansong Dong (3575498)
Heng Xu (244639)

October 2018

Figure S1. Bacterial blight severities of the susceptible rice variety Nipponbare inoculated with sR...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Additional file 5: of Bacterial small RNAs in the Genus Rickettsia

Casey Schroeder (3522818)
Hema Narra (3522812)
Mark Rojas (749281)
Abha Sahni (3522809)
Jignesh Patel (344139)
Kamil Khanipov (749282)
Thomas Wood (2740519)
Yuriy Fofanov (303968)
Sanjeev Sahni (3522815)

December 2015

List of primers used for amplification of R. prowazekii predicted sRNAs. (XLSX 49 kb

Additional file 3: of Bacterial small RNAs in the Genus Rickettsia

Casey Schroeder (3522818)
Hema Narra (3522812)
Mark Rojas (749281)
Abha Sahni (3522809)
Jignesh Patel (344139)
Kamil Khanipov (749282)
Thomas Wood (2740519)
Yuriy Fofanov (303968)
Sanjeev Sahni (3522815)

December 2015

Expression profile of 6S RNA (Panel a), RNaseP_bact_a (Panel b), and Îą-tmRNA (Panel c) during R. pr...

Additional file 4: of Bacterial small RNAs in the Genus Rickettsia

Casey Schroeder (3522818)
Hema Narra (3522812)
Mark Rojas (749281)
Abha Sahni (3522809)
Jignesh Patel (344139)
Kamil Khanipov (749282)
Thomas Wood (2740519)
Yuriy Fofanov (303968)
Sanjeev Sahni (3522815)

December 2015

List of Rickettsia species and strains used throughout this work. The list has been categorized into...

Genome analysis Small RNA gene identification and mRNA target predictions in bacteria

Christophe Pichon
Brice Felden

January 2008

Motivation: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal and transfer or messeng...

Additional file 1: of Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)

Nicholas Mueth (3505565)
Sowmya Ramachandran (425081)
Scot Hulbert (209380)

September 2015

Bioinformatics Pipeline. Graphical summary of the bioinformatic pipeline used to obtain putative Puc...

Additional file 6 of fIdentification of B. napus small RNAs responsive to infection by a necrotrophic pathogen

Roshan Regmi (10770224)
Toby E. Newman (10770227)
Lars G. Kamphuis (10770230)
Mark C. Derbyshire (5841785)

August 2021

Additional file 6: Supplementary Table 3. Targets of conserved microRNAs based on degradome sequenci...

Additional file 3: Table S3. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

Stanford Kwenda (3432485)
Vladimir Gorshkov (1359993)
Aadi Ramesh (3432488)
Sanushka Naidoo (2819755)
Enrico Rubagotti (3432494)
Paul Birch (239446)
Lucy Moleleki (3432491)

January 2016

List of in silico predicted sRNAs using RITs from WebGester DB. S2A: Forward strand predictions. S2B...

Additional file 2: of Global analysis of sRNA target genes in Mycoplasma hyopneumoniae

Tiago Fritsch (5890496)
Franciele Siqueira (3516107)
Irene Schrank (3516098)

October 2018

List of the 145 sRNA target genes. The data presents the analysis of the genome organization, presen...

Genome analysis Small RNA gene identification and mRNA target predictions in Bacteria

Christophe Pichon
Brice Felden

July 2015

Motivation: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal and transfer or messeng...

Additional file 2: Figure S1. of Large scale RNAi screen in Tribolium reveals novel target genes for pest control and the proteasome as prime target

Julia Ulrich (3424907)
Van Dao (3424922)
Upalparna Majumdar (3424928)
Christian Schmitt-Engel (439428)
Jonas Schwirz (3424916)
Dorothea Schultheis (3424910)
Nadi Ströhlein (3424919)
Nicole Troelenberg (3424904)
Daniela Grossmann (48235)
Tobias Richter (332984)
Jürgen Dönitz (14176)
Lizzy Gerischer (3424913)
Gérard Leboulle (3424925)
Andreas Vilcinskas (68058)
Mario Stanke (18759)
Gregor Bucher (48236)

September 2015

shows the results for the most efficient 40 RNAi target genes. In Figure S2. the results of dsRNA in...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Additional file 2: of Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen

Yiqun Hu (294314)
Liyuan Zhang (220168)
Xuan Wang (55634)
Fengli Sun (5049689)
Xiangxin Kong (5863898)
Hansong Dong (3575498)
Heng Xu (244639)

October 2018

Figure S1. Bacterial blight severities of the susceptible rice variety Nipponbare inoculated with sR...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Additional file 5: of Bacterial small RNAs in the Genus Rickettsia

Casey Schroeder (3522818)
Hema Narra (3522812)
Mark Rojas (749281)
Abha Sahni (3522809)
Jignesh Patel (344139)
Kamil Khanipov (749282)
Thomas Wood (2740519)
Yuriy Fofanov (303968)
Sanjeev Sahni (3522815)

December 2015

List of primers used for amplification of R. prowazekii predicted sRNAs. (XLSX 49 kb

Additional file 3: of Bacterial small RNAs in the Genus Rickettsia

Casey Schroeder (3522818)
Hema Narra (3522812)
Mark Rojas (749281)
Abha Sahni (3522809)
Jignesh Patel (344139)
Kamil Khanipov (749282)
Thomas Wood (2740519)
Yuriy Fofanov (303968)
Sanjeev Sahni (3522815)

December 2015

Expression profile of 6S RNA (Panel a), RNaseP_bact_a (Panel b), and Îą-tmRNA (Panel c) during R. pr...

Additional file 4: of Bacterial small RNAs in the Genus Rickettsia

Casey Schroeder (3522818)
Hema Narra (3522812)
Mark Rojas (749281)
Abha Sahni (3522809)
Jignesh Patel (344139)
Kamil Khanipov (749282)
Thomas Wood (2740519)
Yuriy Fofanov (303968)
Sanjeev Sahni (3522815)

December 2015

List of Rickettsia species and strains used throughout this work. The list has been categorized into...

Genome analysis Small RNA gene identification and mRNA target predictions in bacteria

Christophe Pichon
Brice Felden

January 2008

Motivation: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal and transfer or messeng...

Additional file 1: of Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici)

Nicholas Mueth (3505565)
Sowmya Ramachandran (425081)
Scot Hulbert (209380)

September 2015

Bioinformatics Pipeline. Graphical summary of the bioinformatic pipeline used to obtain putative Puc...

Additional file 6 of fIdentification of B. napus small RNAs responsive to infection by a necrotrophic pathogen

Roshan Regmi (10770224)
Toby E. Newman (10770227)
Lars G. Kamphuis (10770230)
Mark C. Derbyshire (5841785)

August 2021

Additional file 6: Supplementary Table 3. Targets of conserved microRNAs based on degradome sequenci...

Additional file 3: Table S3. of Discovery and profiling of small RNAs responsive to stress conditions in the plant pathogen Pectobacterium atrosepticum

Stanford Kwenda (3432485)
Vladimir Gorshkov (1359993)
Aadi Ramesh (3432488)
Sanushka Naidoo (2819755)
Enrico Rubagotti (3432494)
Paul Birch (239446)
Lucy Moleleki (3432491)

January 2016

List of in silico predicted sRNAs using RITs from WebGester DB. S2A: Forward strand predictions. S2B...

Additional file 2: of Global analysis of sRNA target genes in Mycoplasma hyopneumoniae

Tiago Fritsch (5890496)
Franciele Siqueira (3516107)
Irene Schrank (3516098)

October 2018

List of the 145 sRNA target genes. The data presents the analysis of the genome organization, presen...

Genome analysis Small RNA gene identification and mRNA target predictions in Bacteria

Christophe Pichon
Brice Felden

July 2015

Motivation: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal and transfer or messeng...

Additional file 2: Figure S1. of Large scale RNAi screen in Tribolium reveals novel target genes for pest control and the proteasome as prime target

Julia Ulrich (3424907)
Van Dao (3424922)
Upalparna Majumdar (3424928)
Christian Schmitt-Engel (439428)
Jonas Schwirz (3424916)
Dorothea Schultheis (3424910)
Nadi Ströhlein (3424919)
Nicole Troelenberg (3424904)
Daniela Grossmann (48235)
Tobias Richter (332984)
Jürgen Dönitz (14176)
Lizzy Gerischer (3424913)
Gérard Leboulle (3424925)
Andreas Vilcinskas (68058)
Mario Stanke (18759)
Gregor Bucher (48236)

September 2015

shows the results for the most efficient 40 RNAi target genes. In Figure S2. the results of dsRNA in...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Additional file 2: of Two virulent sRNAs identified by genomic sequencing target the type III secretion system in rice bacterial blight pathogen

Yiqun Hu (294314)
Liyuan Zhang (220168)
Xuan Wang (55634)
Fengli Sun (5049689)
Xiangxin Kong (5863898)
Hansong Dong (3575498)
Heng Xu (244639)

October 2018

Figure S1. Bacterial blight severities of the susceptible rice variety Nipponbare inoculated with sR...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Small RNA gene identification and mRNA target predictions in bacteria.

Pichon, Christophe
Felden, Brice

December 2008

International audienceMOTIVATION: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal a...

Additional file 2: of Bacterial small RNAs in the Genus Rickettsia

Abstract

Extracted data

Additional file 2: of Bacterial small RNAs in the Genus Rickettsia

Abstract

Extracted data

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