Additional file 2: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Figure S1. The distribution and presence of simple sequence repeats (SSRs) in the cp genome of Oresi...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 3: of High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1

Aliya Suleimanova (3489401)
Anna Toymentseva (3489410)
Eugenia Boulygina (3489407)
Sergey Kazakov (3489392)
Ayslu Mardanova (3489404)
Nelly Balaban (3489395)
Margarita Sharipova (3489398)

November 2015

Links and DNA sequences of phytase genes detected in Pantoea sp . 3.5.1 genome. (DOCX 14Â kb

Additional file 3: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Hannes Horn (800397)
Alexander Keller (230345)
Ulrich Hildebrandt (480360)
Peter KĂ¤mpfer (3468242)
Markus Riederer (480361)
Ute Hentschel (480362)

January 2016

Average nucleotide identities between Williamsia sp. ARP1 and nearest actinomycete genomes. (PDF 54 ...

Draft genome of the \(Arabidopsis\) \(thaliana\) phyllosphere bacterium, \(Williamsia\) sp. ARP1

Horn, Hannes
Keller, Alexander
Hildebrandt, Ulrich
Kämpfer, Peter
Riederer, Markus
Hentschel, Ute

January 2016

The Gram-positive actinomycete \(Williamsia\) sp. ARP1 was originally isolated from the \(Arabidopsi...

Additional file 2: of High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia

Leila Eshraghi (3489974)
Sofie De Meyer (3489971)
Rui Tian (635672)
Rekha Seshadri (56912)
Natalia Ivanova (8850)
Amrita Pati (18289)
Victor Markowitz (610405)
Tanja Woyke (111784)
Nikos Kyrpides (8859)
Ravi Tiwari (3433439)
Ron Yates (3459590)
John Howieson (3459248)
Wayne Reeve (3414110)

October 2015

Annotation Summary, GenBank Accession Summary, Strain ID Summary, Plant Name Summary, Scientific Nam...

Additional file 2: Table S2. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of amino acids content of Arthrobacter agilis strain L77 by HPLC. (DOCX 15Â kb

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Additional file 1: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Phylogenetic analysis of Dickeya strains based on complete or draft genome sequences. Orthologous gr...

Additional file 2: Table S2. of Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice

Yiyi Wang (649354)
Lin Feng (84785)
Yuxin Zhu (3512447)
Yuan Li (67017)
Hanwei Yan (602147)
Yan Xiang (50965)

September 2015

The function prediction of WRKY III genes of Populus, Grape, Arabidopsis, Rice. (XLS 169 kb

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 1: Table S1. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of organic acid and sugars/polyols from Arthrobacter agilis strain L77 by HPLC...

Additional file 1: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

Mikhail Schelkunov (5618369)
Aleksey Penin (3349076)
Maria Logacheva (3349082)

August 2018

Table S1. Information on transcriptome data. Table S2. Sources of genome sequences. Table S3. List o...

Additional file 2: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

Philippe Prior (206226)
Florent Ailloud (713246)
Beth Dalsing (3465278)
Benoit Remenant (3465272)
Borja Sanchez (3465275)
Caitilyn Allen (206222)

February 2016

Bacterial strains used for proteomic analysis. Phylotype and sequevar classifications for the strain...

Additional file 2: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

Rinat Sultanov (3606350)
Georgij Arapidi (3606356)
Svetlana Vinogradova (3606353)
Vadim Govorun (2131033)
Duglas Luster (3606359)
Alexander Ignatov (1669930)

December 2016

List of Pseudomonas syringae strains selected for phylogenetic analysis (XLSX 57 kb

Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Figure S1. The distribution and presence of simple sequence repeats (SSRs) in the cp genome of Oresi...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 3: of High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1

Aliya Suleimanova (3489401)
Anna Toymentseva (3489410)
Eugenia Boulygina (3489407)
Sergey Kazakov (3489392)
Ayslu Mardanova (3489404)
Nelly Balaban (3489395)
Margarita Sharipova (3489398)

November 2015

Links and DNA sequences of phytase genes detected in Pantoea sp . 3.5.1 genome. (DOCX 14Â kb

Additional file 3: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Hannes Horn (800397)
Alexander Keller (230345)
Ulrich Hildebrandt (480360)
Peter KĂ¤mpfer (3468242)
Markus Riederer (480361)
Ute Hentschel (480362)

January 2016

Average nucleotide identities between Williamsia sp. ARP1 and nearest actinomycete genomes. (PDF 54 ...

Draft genome of the \(Arabidopsis\) \(thaliana\) phyllosphere bacterium, \(Williamsia\) sp. ARP1

Horn, Hannes
Keller, Alexander
Hildebrandt, Ulrich
Kämpfer, Peter
Riederer, Markus
Hentschel, Ute

January 2016

The Gram-positive actinomycete \(Williamsia\) sp. ARP1 was originally isolated from the \(Arabidopsi...

Additional file 2: of High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia

Leila Eshraghi (3489974)
Sofie De Meyer (3489971)
Rui Tian (635672)
Rekha Seshadri (56912)
Natalia Ivanova (8850)
Amrita Pati (18289)
Victor Markowitz (610405)
Tanja Woyke (111784)
Nikos Kyrpides (8859)
Ravi Tiwari (3433439)
Ron Yates (3459590)
John Howieson (3459248)
Wayne Reeve (3414110)

October 2015

Annotation Summary, GenBank Accession Summary, Strain ID Summary, Plant Name Summary, Scientific Nam...

Additional file 2: Table S2. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of amino acids content of Arthrobacter agilis strain L77 by HPLC. (DOCX 15Â kb

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Additional file 1: of Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai

Jingxin Zhang (737647)
John Hu (5944565)
Huifang Shen (1657891)
Yucheng Zhang (136327)
Dayuan Sun (3339438)
Xiaoming Pu (5944568)
Qiyun Yang (503880)
Qiurong Fan (5944571)
Birun Lin (381052)

November 2018

Phylogenetic analysis of Dickeya strains based on complete or draft genome sequences. Orthologous gr...

Additional file 2: Table S2. of Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice

Yiyi Wang (649354)
Lin Feng (84785)
Yuxin Zhu (3512447)
Yuan Li (67017)
Hanwei Yan (602147)
Yan Xiang (50965)

September 2015

The function prediction of WRKY III genes of Populus, Grape, Arabidopsis, Rice. (XLS 169 kb

Additional file 2: of Comparative genomics reveals the unique evolutionary status of Plasmodiophora brassicae and the essential role of GPCR signaling pathways

Kai Bi (4532308)
Tao Chen (75911)
Zhangchao He (6059156)
Zhixiao Gao (4532311)
Ying Zhao (16546)
Huiquan Liu (147143)
Yanping Fu (147148)
Jiatao Xie (147152)
Jiasen Cheng (147154)
Daohong Jiang (147157)

March 2019

Table S2. Comparative analysis of gene density of genome between Plasmodiophora brassicae ZJ-1 and o...

Additional file 1: Table S1. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of organic acid and sugars/polyols from Arthrobacter agilis strain L77 by HPLC...

Additional file 1: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

Mikhail Schelkunov (5618369)
Aleksey Penin (3349076)
Maria Logacheva (3349082)

August 2018

Table S1. Information on transcriptome data. Table S2. Sources of genome sequences. Table S3. List o...

Additional file 2: of Genomic and proteomic evidence supporting the division of the plant pathogen Ralstonia solanacearum into three species

Philippe Prior (206226)
Florent Ailloud (713246)
Beth Dalsing (3465278)
Benoit Remenant (3465272)
Borja Sanchez (3465275)
Caitilyn Allen (206222)

February 2016

Bacterial strains used for proteomic analysis. Phylotype and sequevar classifications for the strain...

Additional file 2: of Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants

Rinat Sultanov (3606350)
Georgij Arapidi (3606356)
Svetlana Vinogradova (3606353)
Vadim Govorun (2131033)
Duglas Luster (3606359)
Alexander Ignatov (1669930)

December 2016

List of Pseudomonas syringae strains selected for phylogenetic analysis (XLSX 57 kb

Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Figure S1. The distribution and presence of simple sequence repeats (SSRs) in the cp genome of Oresi...

Additional file 1: of Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes

Margaret Staton (4676)
Tetyana Zhebentyayeva (3421250)
Bode Olukolu (3421247)
Guang Fang (3421244)
Dana Nelson (3421253)
John Carlson (4491)
Albert Abbott (4680)

October 2015

Symap-generated dot plots for chestnut physical and genetic map against plant reference genomes. (DO...

Additional file 3: of High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1

Aliya Suleimanova (3489401)
Anna Toymentseva (3489410)
Eugenia Boulygina (3489407)
Sergey Kazakov (3489392)
Ayslu Mardanova (3489404)
Nelly Balaban (3489395)
Margarita Sharipova (3489398)

November 2015

Links and DNA sequences of phytase genes detected in Pantoea sp . 3.5.1 genome. (DOCX 14Â kb

Additional file 2: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Abstract

Extracted data

Additional file 2: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Abstract

Extracted data

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