Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Additional file 2: of Interspecific delimitation and relationships among four Ostrya species based on plastomes

Yanyou Jiang (6456608)
Yongzhi Yang (102725)
Zhiqiang Lu (47331)
Dongshi Wan (528262)
Guangpeng Ren (200995)

March 2019

Table S2. 33 complete chloroplast genomes of four Ostrya species from GenBank. (DOCX 17 kb

Additional file 8: Figure S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng (518406)
Meizhen Xu (4578892)
Chen Feng (298683)
Eric von Wettberg (522135)
Ming Kang (503009)

November 2017

The mapping depth and coverage of three Primulina chloroplast genomes shown in Integrative Genomics ...

Additional file 2 of Complete chloroplast of four Sanicula taxa (Apiaceae) endemic to China: lights into genome structure, comparative analysis, and phylogenetic relationships

Huimin Li (126429)
Mingsong Wu (6679409)
Qiang Lai (17016582)
Wei Zhou (24328)
Chunfeng Song (2006278)

September 2023

Additional file 2: Table S2. The comparison of SSRs among four newly sequenced Sanicula taxa chlorop...

Additional file 3: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S1. The detail information of polymorphic gSSRs identified within Oresitrophe and between Ores...

Additional file 4: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S2. Primer pairs designed for each detected polymorphic gSSRs within Oresitrophe and between O...

Additional file 6: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S4. cpSSRs identified from comparative analysis of chloroplast genome for Oresitrophe and Mukd...

Additional file 1: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S3. Locality and voucher information for populations of Oresitrophe rupifraga and Mukdenia ros...

Additional file 3: of Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

Xiaoyang Gao (150076)
Xuan Zhang (56049)
Honghu Meng (6167858)
Jing Li (10611)
Di Zhang (197959)
Changning Liu (14026)

January 2019

Table S6. Number of SSRs in fifteen chloroplast genomes of Paris species. Table S7. Polymorphism of ...

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu
Yuewen Wang
Peizi He
Pan Li
Joongku Lee
Douglas E. Soltis
Chengxin Fu

April 2018

Abstract Background Epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae) have an epilith...

Additional file 1: of Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation

Jong Kim (234077)
Hyunmoon Shin (6200579)
Pavel Ĺ kaloud (6200582)
Jaehee Jung (6200585)
Hwan Yoon (3493268)
John Archibald (3571538)
Woongghi Shin (750566)

February 2019

Figure S2. Overview of Synurophyceae plastid genomes. Linearized maps of five novel complete plastid...

Additional file 1 of Comparative analysis and characterization of the chloroplast genome of Krascheninnikovia ceratoides (Amarathaceae): a xerophytic semi-shrub exhibiting drought resistance and high-quality traits

Yuping Liu (426572)
Changyuan Zheng (17870235)
Xu Su (688635)
Jinyuan Chen (2667418)
Xiaoli Li (279663)
Chenglin Sun (533586)
Mir Muhammad Nizamani (11502315)

January 2024

Additional file 1: Table S1. GenBank accession numbers for the cp genome of 25 species from Amaratha...

Additional file 1: of Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane

Dyfed Lloyd Evans (2862584)
Shailesh Joshi (1391158)
Jianping Wang (215292)

January 2019

List of Tripidium chloroplast amplification primers. List of the 13 primers used in amplifying the c...

Additional file 2: of Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation

Jong Kim (234077)
Hyunmoon Shin (6200579)
Pavel Ĺ kaloud (6200582)
Jaehee Jung (6200585)
Hwan Yoon (3493268)
John Archibald (3571538)
Woongghi Shin (750566)

February 2019

Figure S3. Phylogenetic tree based on dnaB. Numbers on branches are IQ-Tree UFBoot values. The scale...

Additional file 1: of Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros

Wenqing Li (1421971)
Yanlei Liu (1430260)
Yong Yang (63842)
Xiaoman Xie (4070350)
Yizeng Lu (4109974)
Zhirong Yang (348765)
Xiaobai Jin (5795192)
Wenpan Dong (171490)
Zhili Suo (5795201)

September 2018

Figure S1. NJ trees of Diospyros taxa based on each of the ten chloroplast barcodes, showing the res...

Additional file 2: of Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies

Connor Fitzpatrick (5012867)
Patricia Lu-Irving (4911286)
Julia Copeland (4911280)
David Guttman (3524483)
Pauline Wang (3567824)
David Baltrus (5643674)
Katrina Dlugosch (3598367)
Marc Johnson (3271218)

August 2018

Table S3. NCBI GenBank accession numbers for the survey of chloroplast genomes. (XLSX 64 kb

Additional file 2: of Interspecific delimitation and relationships among four Ostrya species based on plastomes

Yanyou Jiang (6456608)
Yongzhi Yang (102725)
Zhiqiang Lu (47331)
Dongshi Wan (528262)
Guangpeng Ren (200995)

March 2019

Table S2. 33 complete chloroplast genomes of four Ostrya species from GenBank. (DOCX 17 kb

Additional file 8: Figure S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng (518406)
Meizhen Xu (4578892)
Chen Feng (298683)
Eric von Wettberg (522135)
Ming Kang (503009)

November 2017

The mapping depth and coverage of three Primulina chloroplast genomes shown in Integrative Genomics ...

Additional file 2 of Complete chloroplast of four Sanicula taxa (Apiaceae) endemic to China: lights into genome structure, comparative analysis, and phylogenetic relationships

Huimin Li (126429)
Mingsong Wu (6679409)
Qiang Lai (17016582)
Wei Zhou (24328)
Chunfeng Song (2006278)

September 2023

Additional file 2: Table S2. The comparison of SSRs among four newly sequenced Sanicula taxa chlorop...

Additional file 3: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S1. The detail information of polymorphic gSSRs identified within Oresitrophe and between Ores...

Additional file 4: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S2. Primer pairs designed for each detected polymorphic gSSRs within Oresitrophe and between O...

Additional file 6: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S4. cpSSRs identified from comparative analysis of chloroplast genome for Oresitrophe and Mukd...

Additional file 1: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu (802738)
Yuewen Wang (3953882)
Peizi He (5060516)
Pan Li (335711)
Joongku Lee (1522297)
Douglas Soltis (117311)
Chengxin Fu (802740)

April 2018

Table S3. Locality and voucher information for populations of Oresitrophe rupifraga and Mukdenia ros...

Additional file 3: of Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

Xiaoyang Gao (150076)
Xuan Zhang (56049)
Honghu Meng (6167858)
Jing Li (10611)
Di Zhang (197959)
Changning Liu (14026)

January 2019

Table S6. Number of SSRs in fifteen chloroplast genomes of Paris species. Table S7. Polymorphism of ...

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Luxian Liu
Yuewen Wang
Peizi He
Pan Li
Joongku Lee
Douglas E. Soltis
Chengxin Fu

April 2018

Abstract Background Epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae) have an epilith...

Additional file 1: of Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation

Jong Kim (234077)
Hyunmoon Shin (6200579)
Pavel Ĺ kaloud (6200582)
Jaehee Jung (6200585)
Hwan Yoon (3493268)
John Archibald (3571538)
Woongghi Shin (750566)

February 2019

Figure S2. Overview of Synurophyceae plastid genomes. Linearized maps of five novel complete plastid...

Additional file 1 of Comparative analysis and characterization of the chloroplast genome of Krascheninnikovia ceratoides (Amarathaceae): a xerophytic semi-shrub exhibiting drought resistance and high-quality traits

Yuping Liu (426572)
Changyuan Zheng (17870235)
Xu Su (688635)
Jinyuan Chen (2667418)
Xiaoli Li (279663)
Chenglin Sun (533586)
Mir Muhammad Nizamani (11502315)

January 2024

Additional file 1: Table S1. GenBank accession numbers for the cp genome of 25 species from Amaratha...

Additional file 1: of Whole chloroplast genome and gene locus phylogenies reveal the taxonomic placement and relationship of Tripidium (Panicoideae: Andropogoneae) to sugarcane

Dyfed Lloyd Evans (2862584)
Shailesh Joshi (1391158)
Jianping Wang (215292)

January 2019

List of Tripidium chloroplast amplification primers. List of the 13 primers used in amplifying the c...

Additional file 2: of Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation

Jong Kim (234077)
Hyunmoon Shin (6200579)
Pavel Ĺ kaloud (6200582)
Jaehee Jung (6200585)
Hwan Yoon (3493268)
John Archibald (3571538)
Woongghi Shin (750566)

February 2019

Figure S3. Phylogenetic tree based on dnaB. Numbers on branches are IQ-Tree UFBoot values. The scale...

Additional file 1: of Interspecific chloroplast genome sequence diversity and genomic resources in Diospyros

Wenqing Li (1421971)
Yanlei Liu (1430260)
Yong Yang (63842)
Xiaoman Xie (4070350)
Yizeng Lu (4109974)
Zhirong Yang (348765)
Xiaobai Jin (5795192)
Wenpan Dong (171490)
Zhili Suo (5795201)

September 2018

Figure S1. NJ trees of Diospyros taxa based on each of the ten chloroplast barcodes, showing the res...

Additional file 2: of Chloroplast sequence variation and the efficacy of peptide nucleic acids for blocking host amplification in plant microbiome studies

Connor Fitzpatrick (5012867)
Patricia Lu-Irving (4911286)
Julia Copeland (4911280)
David Guttman (3524483)
Pauline Wang (3567824)
David Baltrus (5643674)
Katrina Dlugosch (3598367)
Marc Johnson (3271218)

August 2018

Table S3. NCBI GenBank accession numbers for the survey of chloroplast genomes. (XLSX 64 kb

Additional file 2: of Interspecific delimitation and relationships among four Ostrya species based on plastomes

Yanyou Jiang (6456608)
Yongzhi Yang (102725)
Zhiqiang Lu (47331)
Dongshi Wan (528262)
Guangpeng Ren (200995)

March 2019

Table S2. 33 complete chloroplast genomes of four Ostrya species from GenBank. (DOCX 17 kb

Additional file 8: Figure S1. of The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies

Chao Feng (518406)
Meizhen Xu (4578892)
Chen Feng (298683)
Eric von Wettberg (522135)
Ming Kang (503009)

November 2017

The mapping depth and coverage of three Primulina chloroplast genomes shown in Integrative Genomics ...

Additional file 2 of Complete chloroplast of four Sanicula taxa (Apiaceae) endemic to China: lights into genome structure, comparative analysis, and phylogenetic relationships

Huimin Li (126429)
Mingsong Wu (6679409)
Qiang Lai (17016582)
Wei Zhou (24328)
Chunfeng Song (2006278)

September 2023

Additional file 2: Table S2. The comparison of SSRs among four newly sequenced Sanicula taxa chlorop...

Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Abstract

Extracted data

Additional file 2: of Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

Abstract

Extracted data

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