Additional file 1: Table S1. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Figure S1. of Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Humberto Peralta (3543215)
Alejandro Aguilar (531028)
Rafael Díaz (3056607)
Yolanda Mora (129646)
Gabriel Martínez-Batallar (3543221)
Emmanuel Salazar (3543227)
Carmen Vargas-Lagunas (3543218)
Esperanza Martínez (3543224)
Sergio Encarnación (80183)
Lourdes Girard (2002)
Jaime Mora (3543212)

September 2016

Plasmids of S. americanum strains visualized by pulsed field gel electrophoresis (PFGE). 1, CCGM7, 2...

Additional file 1: Table S1. of Genomic mutational analysis of the impact of the classical strain improvement program on Î˛â lactam producing Penicillium chrysogenum

Salo, Oleksandr
Ries, Marco
Medema, Marnix
Lankhorst, Peter P.
Vreeken, Rob J.
Bovenberg, Roel
Driessen, Arnold J.M.
Molecular Microbiology
Groningen Biomolecular Sciences and Biotechnology
Leiden University
LACDR
DSM Biotechnology Centre
Kluyver Centre for Genomics of Industrial Fermentations
Bioinformatics, Wageningen University

November 2015

The list of coding mutations acquired by the strain lineage of P. chrysogenum. (XLSX 52 kb

Additional file 2: Table S2. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of amino acids content of Arthrobacter agilis strain L77 by HPLC. (DOCX 15Â kb

Additional file 1: of Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)

Xue Sun (389835)
Jun Wu (4002)
Guangce Wang (230169)
Yani Kang (698978)
Hong Ooi (3484862)
Tingting Shen (501346)
Fangjun Wang (1654270)
Rui Yang (293531)
Nianjun Xu (2681869)
Xiaodong Zhao (327921)

May 2018

Table S1. Comparison of the number of enzymes involved in agar synthesis in the 6 species. (DOCX 26 ...

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Additional file 2: Table S1. of High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)

Yogita Patil (3760093)
Nicolai MĂźller (3760102)
Bernhard Schink (382427)
William Whitman (3426341)
Marcel Huntemann (34103)
Alicia Clum (111778)
Manoj Pillay (3333165)
Krishnaveni Palaniappan (3333150)
Neha Varghese (146576)
Natalia Mikhailova (224155)
Dimitrios Stamatis (3760096)
T. Reddy (3433427)
Chris Daum (2815984)
Nicole Shapiro (3333144)
Natalia Ivanova (8850)
Nikos Kyrpides (8859)
Tanja Woyke (111784)
Madan Junghare (3760099)

February 2017

IMG annotated functions of selected putative key enzymes involved in the metabolic pathways identifi...

Additional file 1: of Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437

Pratama, Akbar Adjie
Haq, Irshad Ul
Nazir, Rashid
Chaib De Mares, Maryam
van Elsas, Jan Dirk
Van Elsas lab

December 2017

Table S1 Sequencing statistics analysis of Paraburkholderia terrae BS007, BS110, and BS437. Table S2...

Additional file 2: of Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)

Xue Sun (389835)
Jun Wu (4002)
Guangce Wang (230169)
Yani Kang (698978)
Hong Ooi (3484862)
Tingting Shen (501346)
Fangjun Wang (1654270)
Rui Yang (293531)
Nianjun Xu (2681869)
Xiaodong Zhao (327921)

May 2018

Table S2. The enzymes involved in converting the agar precursor into agar in Gp. lemaneiformis. (DOC...

Additional file 3: of High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1

Aliya Suleimanova (3489401)
Anna Toymentseva (3489410)
Eugenia Boulygina (3489407)
Sergey Kazakov (3489392)
Ayslu Mardanova (3489404)
Nelly Balaban (3489395)
Margarita Sharipova (3489398)

November 2015

Links and DNA sequences of phytase genes detected in Pantoea sp . 3.5.1 genome. (DOCX 14Â kb

Additional file 1: of Genomic and transcriptomic analysis of carbohydrate utilization by Paenibacillus sp. JDR-2: systems for bioprocessing plant polysaccharides

Neha Sawhney (3400565)
Casey Crooks (3400562)
Virginia Chow (3400574)
James Preston (3400571)
Franz St John (3400568)

February 2016

A table summarizing the proteins belonging to the xylan utilization systems in Pjdr2 as previously d...

Additional file 3: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Hannes Horn (800397)
Alexander Keller (230345)
Ulrich Hildebrandt (480360)
Peter KĂ¤mpfer (3468242)
Markus Riederer (480361)
Ute Hentschel (480362)

January 2016

Average nucleotide identities between Williamsia sp. ARP1 and nearest actinomycete genomes. (PDF 54 ...

Additional file 2: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Hannes Horn (800397)
Alexander Keller (230345)
Ulrich Hildebrandt (480360)
Peter KĂ¤mpfer (3468242)
Markus Riederer (480361)
Ute Hentschel (480362)

January 2016

Orthologous gene comparison of Williamsia sp. ARP1 and three other actinomycete genomes. (PDF 58 kb

Additional file 1: of Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3

Shahid Manzoor (614814)
Bettina MĂźller (3413231)
Adnan Niazi (3413234)
Anna SchnĂźrer (3413237)
Erik Bongcam-Rudloff (168047)

November 2015

Table S1. Associated MIGS record for Syntrophaceticus schinkii strain Sp3. (DOCX 111Â kb

Additional file 1: of Draft genome sequence of Bacillus amyloliquefaciens subsp. plantarum strain Fito_F321, an endophyte microorganism from Vitis vinifera with biocontrol potential

Cátia Pinto (509999)
Susana Sousa (181705)
Hugo Froufe (5922794)
Conceição Egas (236825)
Christophe Clément (303267)
Florence Fontaine (2131105)
Ana Gomes (1479244)

November 2018

Table S1. General overview of genes involved in bacterium-plant interaction in B. amyloliquefaciens ...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Figure S1. of Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Humberto Peralta (3543215)
Alejandro Aguilar (531028)
Rafael Díaz (3056607)
Yolanda Mora (129646)
Gabriel Martínez-Batallar (3543221)
Emmanuel Salazar (3543227)
Carmen Vargas-Lagunas (3543218)
Esperanza Martínez (3543224)
Sergio Encarnación (80183)
Lourdes Girard (2002)
Jaime Mora (3543212)

September 2016

Plasmids of S. americanum strains visualized by pulsed field gel electrophoresis (PFGE). 1, CCGM7, 2...

Additional file 1: Table S1. of Genomic mutational analysis of the impact of the classical strain improvement program on Î˛â lactam producing Penicillium chrysogenum

Salo, Oleksandr
Ries, Marco
Medema, Marnix
Lankhorst, Peter P.
Vreeken, Rob J.
Bovenberg, Roel
Driessen, Arnold J.M.
Molecular Microbiology
Groningen Biomolecular Sciences and Biotechnology
Leiden University
LACDR
DSM Biotechnology Centre
Kluyver Centre for Genomics of Industrial Fermentations
Bioinformatics, Wageningen University

November 2015

The list of coding mutations acquired by the strain lineage of P. chrysogenum. (XLSX 52 kb

Additional file 2: Table S2. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of amino acids content of Arthrobacter agilis strain L77 by HPLC. (DOCX 15Â kb

Additional file 1: of Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)

Xue Sun (389835)
Jun Wu (4002)
Guangce Wang (230169)
Yani Kang (698978)
Hong Ooi (3484862)
Tingting Shen (501346)
Fangjun Wang (1654270)
Rui Yang (293531)
Nianjun Xu (2681869)
Xiaodong Zhao (327921)

May 2018

Table S1. Comparison of the number of enzymes involved in agar synthesis in the 6 species. (DOCX 26 ...

Additional file 1: Table S1. of Complete genome sequence of Paenibacillus yonginensis DCY84T, a novel plant Symbiont that promotes growth via induced systemic resistance

Yeon-Ju Kim (622784)
Johan Sukweenadhi (4513249)
Ji Seok (4513240)
Chang Kang (4355239)
Eul-Su Choi (4513246)
Sathiyamoorthy Subramaniyam (2614864)
Deok Yang (4513243)

October 2017

Genome comparison of strain DCY84T and closest Paenibacillus strains. Table S2. COGs analysis of dir...

Additional file 2: Table S1. of High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)

Yogita Patil (3760093)
Nicolai MĂźller (3760102)
Bernhard Schink (382427)
William Whitman (3426341)
Marcel Huntemann (34103)
Alicia Clum (111778)
Manoj Pillay (3333165)
Krishnaveni Palaniappan (3333150)
Neha Varghese (146576)
Natalia Mikhailova (224155)
Dimitrios Stamatis (3760096)
T. Reddy (3433427)
Chris Daum (2815984)
Nicole Shapiro (3333144)
Natalia Ivanova (8850)
Nikos Kyrpides (8859)
Tanja Woyke (111784)
Madan Junghare (3760099)

February 2017

IMG annotated functions of selected putative key enzymes involved in the metabolic pathways identifi...

Additional file 1: of Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437

Pratama, Akbar Adjie
Haq, Irshad Ul
Nazir, Rashid
Chaib De Mares, Maryam
van Elsas, Jan Dirk
Van Elsas lab

December 2017

Table S1 Sequencing statistics analysis of Paraburkholderia terrae BS007, BS110, and BS437. Table S2...

Additional file 2: of Genomic analyses of unique carbohydrate and phytohormone metabolism in the macroalga Gracilariopsis lemaneiformis (Rhodophyta)

Xue Sun (389835)
Jun Wu (4002)
Guangce Wang (230169)
Yani Kang (698978)
Hong Ooi (3484862)
Tingting Shen (501346)
Fangjun Wang (1654270)
Rui Yang (293531)
Nianjun Xu (2681869)
Xiaodong Zhao (327921)

May 2018

Table S2. The enzymes involved in converting the agar precursor into agar in Gp. lemaneiformis. (DOC...

Additional file 3: of High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1

Aliya Suleimanova (3489401)
Anna Toymentseva (3489410)
Eugenia Boulygina (3489407)
Sergey Kazakov (3489392)
Ayslu Mardanova (3489404)
Nelly Balaban (3489395)
Margarita Sharipova (3489398)

November 2015

Links and DNA sequences of phytase genes detected in Pantoea sp . 3.5.1 genome. (DOCX 14Â kb

Additional file 1: of Genomic and transcriptomic analysis of carbohydrate utilization by Paenibacillus sp. JDR-2: systems for bioprocessing plant polysaccharides

Neha Sawhney (3400565)
Casey Crooks (3400562)
Virginia Chow (3400574)
James Preston (3400571)
Franz St John (3400568)

February 2016

A table summarizing the proteins belonging to the xylan utilization systems in Pjdr2 as previously d...

Additional file 3: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Hannes Horn (800397)
Alexander Keller (230345)
Ulrich Hildebrandt (480360)
Peter KĂ¤mpfer (3468242)
Markus Riederer (480361)
Ute Hentschel (480362)

January 2016

Average nucleotide identities between Williamsia sp. ARP1 and nearest actinomycete genomes. (PDF 54 ...

Additional file 2: of Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Hannes Horn (800397)
Alexander Keller (230345)
Ulrich Hildebrandt (480360)
Peter KĂ¤mpfer (3468242)
Markus Riederer (480361)
Ute Hentschel (480362)

January 2016

Orthologous gene comparison of Williamsia sp. ARP1 and three other actinomycete genomes. (PDF 58 kb

Additional file 1: of Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3

Shahid Manzoor (614814)
Bettina MĂźller (3413231)
Adnan Niazi (3413234)
Anna SchnĂźrer (3413237)
Erik Bongcam-Rudloff (168047)

November 2015

Table S1. Associated MIGS record for Syntrophaceticus schinkii strain Sp3. (DOCX 111Â kb

Additional file 1: of Draft genome sequence of Bacillus amyloliquefaciens subsp. plantarum strain Fito_F321, an endophyte microorganism from Vitis vinifera with biocontrol potential

Cátia Pinto (509999)
Susana Sousa (181705)
Hugo Froufe (5922794)
Conceição Egas (236825)
Christophe Clément (303267)
Florence Fontaine (2131105)
Ana Gomes (1479244)

November 2018

Table S1. General overview of genes involved in bacterium-plant interaction in B. amyloliquefaciens ...

Additional file 1: Table S1. of Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Zhao, Xin
Kuipers, Oscar P.
Molecular Genetics
Tianjin University

November 2016

Accession numbers of whole genome sequences (reported in Genbank) of Bacillales analyzed in this stu...

Additional file 1: Figure S1. of Genomic studies of nitrogen-fixing rhizobial strains from Phaseolus vulgaris seeds and nodules

Humberto Peralta (3543215)
Alejandro Aguilar (531028)
Rafael Díaz (3056607)
Yolanda Mora (129646)
Gabriel Martínez-Batallar (3543221)
Emmanuel Salazar (3543227)
Carmen Vargas-Lagunas (3543218)
Esperanza Martínez (3543224)
Sergio Encarnación (80183)
Lourdes Girard (2002)
Jaime Mora (3543212)

September 2016

Plasmids of S. americanum strains visualized by pulsed field gel electrophoresis (PFGE). 1, CCGM7, 2...

Additional file 1: Table S1. of Genomic mutational analysis of the impact of the classical strain improvement program on Î˛â lactam producing Penicillium chrysogenum

Salo, Oleksandr
Ries, Marco
Medema, Marnix
Lankhorst, Peter P.
Vreeken, Rob J.
Bovenberg, Roel
Driessen, Arnold J.M.
Molecular Microbiology
Groningen Biomolecular Sciences and Biotechnology
Leiden University
LACDR
DSM Biotechnology Centre
Kluyver Centre for Genomics of Industrial Fermentations
Bioinformatics, Wageningen University

November 2015

The list of coding mutations acquired by the strain lineage of P. chrysogenum. (XLSX 52 kb

Additional file 1: Table S1. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Abstract

Extracted data

Additional file 1: Table S1. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Abstract

Extracted data

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